Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01952 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGGATTCCATGGGATGTCGATACTGAGGGATTGAGGGAATATATGAGCAAGTTTGGGGAGCTGGAAGATTGCATTGTCATGAAGGAGCGTTCAACTGGACGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGAAGTATTATCAAGTGAACATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCGACACCAAAGGAGGAAATGAGGGCACCAGTCAAAAAAGTTACTAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCCGAAGTCATTTTGAGAAATATGGTGAAATAACAGATTTATACATGCCAAAGGATCAGGGCTCCAAAATGCACCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGATTCTGTGGAGAATTTGATGTCAGAAACACATGAACTGGGAGGATCTGCTGTGGTGGTTGATCGAGCTACTCCTAAGGATGATGACTTTAAGCCAATTGGCAGAATGCCGCCGCCGCCGCCGCCGCCACAAGGAGGATATGGTGCATACAATGCTTATATCTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCACCCTGGCCCAATTTATGGACGGGGAGATCCTGCTCGGAGAACTAGCAAAAAAATTTTCGTCGGCCGTCTTCCCCCAGAAGCAACTTCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCGAGGGATCCTAAGAGAACAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCTCGAAGGTCTCATGAGATTTGTGGACATCAGGTAGCAATAGATTCGGCTACGCCTGTTGATGATGCAGGGCCCAGTGGGAATTTTATGATGAATAGTATGGAAACTTTTGGGGGATATGGTGGTCCTGTGCGATCTTATGGGAGGATGTATGGTAGCATAGACTTTGACGATTGGGGTTATGGAATTGGGAGACCGTCAAGAGCAGATTGGAGGTATAGACCATACTAG 1092 0.4505 MEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGEITDLYMPKDQGSKMHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKDDDFKPIGRMPPPPPPPQGGYGAYNAYISAATRYAALGAPTLYDHPGPIYGRGDPARRTSKKIFVGRLPPEATSEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMNSMETFGGYGGPVRSYGRMYGSIDFDDWGYGIGRPSRADWRYRPY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01952 363 Gene3D - 88 174 IPR012677 -
Pumo8g01952 363 Gene3D - 1 87 IPR012677 -
Pumo8g01952 363 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 228 324 - -
Pumo8g01952 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 286 IPR000504 GO:0003723
Pumo8g01952 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Pumo8g01952 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Pumo8g01952 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Pumo8g01952 363 FunFam RNA-binding family protein isoform 1 227 310 - -
Pumo8g01952 363 SMART rrm1_1 231 302 IPR000504 GO:0003723
Pumo8g01952 363 SMART rrm1_1 93 164 IPR000504 GO:0003723
Pumo8g01952 363 SMART rrm1_1 5 76 IPR000504 GO:0003723
Pumo8g01952 363 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Pumo8g01952 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 306 IPR000504 GO:0003723
Pumo8g01952 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Pumo8g01952 363 Gene3D - 225 310 IPR012677 -
Pumo8g01952 363 SUPERFAMILY RNA-binding domain, RBD 88 191 IPR035979 GO:0003676
Pumo8g01952 363 SUPERFAMILY RNA-binding domain, RBD 226 329 IPR035979 GO:0003676
Pumo8g01952 363 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Pumo8g01952 363 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01952 Pumo-Chr8 56096570 56101142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01952 6 279 Eukaryotic Initiation Factors Gene Family AT2G36660 22.826 1.12e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01952 K14411 - gmx:100795240 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01952 8 56096570 56101142 Pumo8g01952 8 56096570 56101142 ECH