Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01946 ATGTCGCAACGATCGGTGCCGGCACCGTTCTTGACGAAGACGTATCAGTTGGTGGATGATCCGGGGACGGACGAGGTGATATCGTGGAGTGAAAGTGGGAACACTTTTGTGGTGTGGAAACATGCGGATTTTGCAAAGGATTTGCTCCCTAAATATTTCAAGCACAATAACTTCTCCAGCTTTGTTCGTCAGCTCAACACCTATGGATTCCGAAAGATTGTGCCAGACAAATGGGAATTCGCGAACGAACACTTCAAGCGAGGGCAGAAGAAACTTCTGTCGGAGATCAAACGCCGCAAGACCGTGCCCCAATCGTCGGCGCAACCCACGGAGGCCGGAAAATCCGGCCCCGATGGTAACTCCCCGTCAAACTCCGGCGGCGGCGACGACGCGGGGTCCACTTCAACCTCGTCCTCGTCCTCCGGTTCCAAGAACCCGGGATCGATGGACACAACAACAACTCCTCATCAGTTATCGAGCGAGAACGAGAAACTGAAGAAGGATAACGAAACGCTGAGTTGCGAGCTGGCACGTGCGAGGAAGCAGTGCGATGAGCTCGTGGCTTTTCTCAGGGACCGTCTGATGGTGGGTCCCGATCAGATCGATCGCATCATGCGGCAAGGAAGTTGCGGATCTGAAAACGCGGTAGGTGAAGATGGAGGAGACTGTTTGAAACTGTTTGGTGTTTGGTTAAAAGGCCATACACCACTAACAGACAAAAGAAACAACCACCACAAGAGAGGCCGCGAAGACCAAATGGGCTTCGGTGGGCCTCGCCTCAAGGAGTCAAAGCCCGTTGTTGACTTTGGAGCTGTAAATGTCATGATGAAGAGCAACAAGGTTTGCAACTGA 852 0.5258 MSQRSVPAPFLTKTYQLVDDPGTDEVISWSESGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGQKKLLSEIKRRKTVPQSSAQPTEAGKSGPDGNSPSNSGGGDDAGSTSTSSSSSGSKNPGSMDTTTTPHQLSSENEKLKKDNETLSCELARARKQCDELVAFLRDRLMVGPDQIDRIMRQGSCGSENAVGEDGGDCLKLFGVWLKGHTPLTDKRNNHHKRGREDQMGFGGPRLKESKPVVDFGAVNVMMKSNKVCN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01946 283 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g01946 283 Coils Coil 162 182 - -
Pumo8g01946 283 Gene3D - 150 196 - -
Pumo8g01946 283 MobiDBLite consensus disorder prediction 238 260 - -
Pumo8g01946 283 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 193 IPR027725 -
Pumo8g01946 283 FunFam Heat stress transcription factor B-4 2 100 - -
Pumo8g01946 283 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g01946 283 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g01946 283 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g01946 283 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Pumo8g01946 283 MobiDBLite consensus disorder prediction 94 168 - -
Pumo8g01946 283 MobiDBLite consensus disorder prediction 243 257 - -
Pumo8g01946 283 MobiDBLite consensus disorder prediction 99 159 - -
Pumo8g01946 283 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g01946 283 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo8g01946 283 Gene3D - 2 101 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01946 Pumo-Chr8 55998717 56000787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01946 2 283 HSF AT4G36990 53.020 2.35e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo8g01946 HSF_DNA-bind 4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01946 K09419 - gmx:100791543 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01946 8 55998717 56000787 Pumo8g01946 8 55998717 56000787 ECH
Pumo8g01946 8 55998717 56000787 Pumo4g01978 4 27018612 27022061 PCT