Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01928 ATGCGCTGGTTCCCCACCCTCGTCTTCTCCCATTCTCATTCTAATTCATCATCAACGTCAACGTCATCTTCGGCGACTCTAAATTCTTCTCCTTCGACGTCCTCCGGCCCCGACCCCAGGAAGAACAGCCGCGCCGCCTGGTTCTTCGGCAGCGGGAAAAGGTCCACGCGCTCCAGGAAGCTCACCCACATCGCCGACTTAGACGCCCTCGTCGTGCCCCCCTTGTCTCGCTCCTCCAGCACCTTCGATCGTTCCTCCACCTCCTCCGTTCAGCCTCAGCCGTTGCCTTTGCCCAGAGATGCCGACTACCGTTTTCCCTCGCCCAAAGACGCCGCCGTCGATGTTACCCTCACCCCTGGTTTTCGAATGCGCAGTGTTTTTGCAAGCCAAGAGCCAAGAAAAAATACGGAGCAGGTGGAGACAAGGTCACCAGGGGTGGTGCCTCAACAAGACACGAGCGGTGGAGCAAGTACAAGAACTCAAGGAGATAATTTCTGGATGAGCATCCCTGCAAGAAGTGCACCAACTAGTCCTTTTGCCAGTCCCAAAATCAGCCCAAATACTACCAAAACCGATGATTTTATACCATACTATTACGTCTCACCCAAAGGAAACCAGTTCTGGTCAGCACCAGAAATGCCCACATTCGACACTTCTGCTGGCCACCCACCTCCTGCTTTCTTTGATTTATCAGCATTACGCACTGATAACATTCCTTCTCCCCACCAAAGTCCACGAGGAAAAAGCCCAACCCAACACCCCAGAAGCCCACCTGGGCCTTCTTCTTCATCCATACCCCCCAGGTTATCCCTCGACACCTCAGTAGCACGTCGTGAAAGCACTGCTCCTCACACTGTTCACCCCTTACCCTTGCCTCCTTGGGCTGGGCCTGGTGGGCCCCCCTTGCTTTCACCATCTGCTACCTTCTCCCCACCCGTGGCCAAGACAGAATCCTTGCCAATGAAAAACCAGTGGCAAAAAGGGAAGCTTCTTGGCCGAGGTACCTTTGGAACTGTTTATGTTGCCACCAATAGAAAAACTGGAGCATTGTGTGCAATGAAGGAAGCAGAAATATTTTCTGATGATCCAAAGTCTGCAGAGTGCATAAAGCAGTTAGAGCAGGAAATTAAAGTTCTTAGCCATCTGAAACATCCAAACATTGTGCAGTATTTTGGTAGCGAAATAGTAGAAGACAGGTTTTATATTTATTTGGAATATGTCCATCCCGGTTCAATCAATAAATACGTTCGCGAACATTGTGGTGCAATAACAGAATGTGTTGTTCGGAATTTCACGCGCCATATTCTTTCGGGGTTGGCTTACTTGCATAGCAAAAAAACAATTCACAGGGACATCAAAGGAGCTAACTTGCTTGTTGATTCTGCTGGTGTTGTTAAGCTTGCGGACTTTGGGATGGCCAAGCATCTAACTGGACATGTTGCAGATCTTTCTTTGAAGGGAAGCCCCTATTGGATGGCTCCAGAGCTTTTGCAAGCGGTTGTGGAAAAAGATAACAGCTCTGACCTAGCTTTCGCTGTTGATATTTGGAGTTTGGGTTGTACAATTATTGAAATGTTCACGGGGAAGCCTCCTTGGAGTGAGTACGAAGGAGCCGCAGCTATGTTTAAGGTTATGAAGGATACCCCTCCTATACCAGAAACATTGTCAGCAGAGGGTAAAGATTTCCTGAGACTTTGCTTTATAAGAAATCCAGCAGAGCGACCAACTGCTTCAATGTTACTAGAACATCGATTTCTGAAAAACTTGCAACAGTCAGATGTTTCATCTTCCATGCAGCTGTATAATGGAACAACCTTGATGGATATCCATAGTCCCAGAGAGTTGTCTGAAAATAAACTTGATCATATTTCTATTCCCAGTGCACATATTGGTAAAGGAAAATTAGCCACTGAGAGTAGCATCTCAGTGCCCTACTCACTCTACTCTTGA 1950 0.48 MRWFPTLVFSHSHSNSSSTSTSSSATLNSSPSTSSGPDPRKNSRAAWFFGSGKRSTRSRKLTHIADLDALVVPPLSRSSSTFDRSSTSSVQPQPLPLPRDADYRFPSPKDAAVDVTLTPGFRMRSVFASQEPRKNTEQVETRSPGVVPQQDTSGGASTRTQGDNFWMSIPARSAPTSPFASPKISPNTTKTDDFIPYYYVSPKGNQFWSAPEMPTFDTSAGHPPPAFFDLSALRTDNIPSPHQSPRGKSPTQHPRSPPGPSSSSIPPRLSLDTSVARRESTAPHTVHPLPLPPWAGPGGPPLLSPSATFSPPVAKTESLPMKNQWQKGKLLGRGTFGTVYVATNRKTGALCAMKEAEIFSDDPKSAECIKQLEQEIKVLSHLKHPNIVQYFGSEIVEDRFYIYLEYVHPGSINKYVREHCGAITECVVRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGHVADLSLKGSPYWMAPELLQAVVEKDNSSDLAFAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMKDTPPIPETLSAEGKDFLRLCFIRNPAERPTASMLLEHRFLKNLQQSDVSSSMQLYNGTTLMDIHSPRELSENKLDHISIPSAHIGKGKLATESSISVPYSLYS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01928 649 MobiDBLite consensus disorder prediction 76 94 - -
Pumo8g01928 649 Pfam Protein kinase domain 326 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01928 649 ProSiteProfiles Protein kinase domain profile. 325 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01928 649 MobiDBLite consensus disorder prediction 212 314 - -
Pumo8g01928 649 Gene3D Transferase(Phosphotransferase) domain 1 321 623 - -
Pumo8g01928 649 MobiDBLite consensus disorder prediction 168 187 - -
Pumo8g01928 649 MobiDBLite consensus disorder prediction 126 163 - -
Pumo8g01928 649 MobiDBLite consensus disorder prediction 8 40 - -
Pumo8g01928 649 FunFam Aurora kinase A 317 410 - -
Pumo8g01928 649 MobiDBLite consensus disorder prediction 76 100 - -
Pumo8g01928 649 MobiDBLite consensus disorder prediction 236 250 - -
Pumo8g01928 649 FunFam Mitogen-activated protein kinase kinase kinase 5 322 622 - -
Pumo8g01928 649 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 11 597 - -
Pumo8g01928 649 SMART serkin_6 325 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01928 649 MobiDBLite consensus disorder prediction 286 307 - -
Pumo8g01928 649 MobiDBLite consensus disorder prediction 129 163 - -
Pumo8g01928 649 SUPERFAMILY Protein kinase-like (PK-like) 313 610 IPR011009 -
Pumo8g01928 649 MobiDBLite consensus disorder prediction 1 45 - -
Pumo8g01928 649 MobiDBLite consensus disorder prediction 265 280 - -
Pumo8g01928 649 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01928 Pumo-Chr8 55760366 55765821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01928 1 623 MAP Kinase Kinase Kinase AT5G66850 54.532 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pumo8g01928 Pkinase 4.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01928 - - gmx:100793654 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01928 8 55760366 55765821 Pumo4g02009 4 27490508 27496028 PCT