Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01927 ATGTCATCATCATCGAATTCGCCGTGCGCGGCGTGCAAGTTTCTGAGGCGAAAGTGCACGCAAGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCGAAGCTTCTCAACGAGCTCAGCGCGGCGCAGCGAGACGACGCCGTTAAGTCCCTCGCGTACGAGGCCGAGGCGCGTCTCAGGGACCCCGTATACGGCTGCGTGGGCCTCATCTCCGTCCTCCAACACAAGCTCAGGCAGATCCAGGTCGAACTCAACAATGCAAAGAAGGAACTCGCAACATATATTGGTCCCCAAGCTCTGCAGGGTATTCCCGCTCCTATTCTCCAACAGCACCCTAATAACCCTTTTCCCGGTGCCATGTATGGCAACATGCCGGCTGCGACAGCCGCCGTTCACGGCGGGCAGTTGGTGATTCGCGACGCTCAGCCGGCGCCGCAGCAGCATCAGATCTTGGAGGCGCAGCAGTTGGCTGCGGCTGTGGCGGCGAGGGAACAGCAGGAGATGTTTAGAAGTTATGAGCATCAGCAGCAGCAGCAGGAGTTTCTAAGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAGGTGTCCCCAGCTGCTGGCTCTGCTGACCAGTTGTCTCCTTCGTTGGCTTTGGGATCCTTCGATAACGCTTACCACATGCAGCAACCACAGCAAGGAGAACCTCATCATCATCATCATCATCCTCATCACATTCCTCTTGAGGCTCAGCTGCTTCTCCCTCCGCAGCAGAAGCAACCGCAGCAACAAACCCACGAGGTTCAACTGCCCCTTCACCAGCAACATTCTGAAAGCGAGGAGTGTAGGAGTGTTGGTCCATCTTGTTGA 918 0.5719 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELNNAKKELATYIGPQALQGIPAPILQQHPNNPFPGAMYGNMPAATAAVHGGQLVIRDAQPAPQQHQILEAQQLAAAVAAREQQEMFRSYEHQQQQQEFLRFSGGFDVGSASSAGGFSQVSPAAGSADQLSPSLALGSFDNAYHMQQPQQGEPHHHHHHPHHIPLEAQLLLPPQQKQPQQQTHEVQLPLHQQHSESEECRSVGPSC 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01927 305 Coils Coil 87 107 - -
Pumo8g01927 305 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Pumo8g01927 305 MobiDBLite consensus disorder prediction 272 288 - -
Pumo8g01927 305 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Pumo8g01927 305 MobiDBLite consensus disorder prediction 272 305 - -
Pumo8g01927 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01927 Pumo-Chr8 55743572 55745478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01927 3 299 AS2 family AT5G66870 49.062 7.75e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo8g01927 LOB 9.9e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01927 8 55743572 55745478 Pumo8g01927 8 55743572 55745478 ECH
Pumo4g02013 4 27580413 27581204 Pumo8g01927 8 55743572 55745478 PCT