Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01924 ATGGTACTCTGCGACTTCTGGGAGCACACTAGTCTCGCTCAGAGTGAGAGAATAACACCCAAACCAAAACCAACTATCATGGACCTCAGCTTGGATTTGAGTTTGGGCTTTGTCCCCAAACCCCTTTCCCTGTTTTTCGGCAACGACGTTTCTGGGAACAGAGACAAGCCCGACAAACTGGCCACGCTCGATGCCTTCCTGCAGAGATTGGAGGAAGAATTGAGCAAGGTCCAGGCTTTCAAACGCGAGCTTCCTCTTTGCATGCTCCTCCTAAACGATGCTTTAGCGAGATTGAAGGAGGAAAAAACAAAGTGTTCGGGAATGCAAGATCCACCAATGAAAACCAGTTCTGGAGGAAATGAAAATGAAAGCTCTGAGAAGAAGAATTGGCTGAGTTCAGCACAGCTTTGGAGCACTCAAAAAACCAAATCGAGGAATGAGGAAGATGATAGGTCTGTGCCAGAGAACCCAATGAATAGAAAATCGTGTGTCCCCGAGAAGGAGGGTTCGCAAGTTCCGAGCTTTGGTTTGATGGCTCGTGCGTCTGAACTGAGTCATAGCAATTCCAAGAGTGTTTGTGGAGATACCAGTTCTGGCTCGTCTTTGCTCCGTGTTGAGGTACAGAGTCAGCCACAACCGCCGCAACATATGCAGCAGAATCCTAGGAAACAACGCCGGTGCTGGTCGCCGGAGCTTCATCGGCGCTTTGTTGACGCGCTTCAACAACTTGGTGGAGCACAAGTGGCCACCCCTAAACAGATTAGAGAACTGATGCAGGTGGAGGGCCTTACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATGTTAGGAGACTCCCAGCTTCTTCAGTTGGACAGGCTGATAATGGTTCATGGATGGTTCAAGATGAATGTGGGGATAAATCAAAGGGAAACATGTCACAGTCTGGTTCTCCACAAGGTCCTCTCACACCTCTGCTCCTAGGAGGAGGGTCTGCCAAGGGTCTCTCAAGCCCTGGACGGAACAGTGTGGATGCAGAAGATGAGCAATCAGATTGCCGGAATTGGAAAGGAGGGCTCCACCACCACCTTGAAGCTGATAATCACAGCCTCTAA 1104 0.4918 MVLCDFWEHTSLAQSERITPKPKPTIMDLSLDLSLGFVPKPLSLFFGNDVSGNRDKPDKLATLDAFLQRLEEELSKVQAFKRELPLCMLLLNDALARLKEEKTKCSGMQDPPMKTSSGGNENESSEKKNWLSSAQLWSTQKTKSRNEEDDRSVPENPMNRKSCVPEKEGSQVPSFGLMARASELSHSNSKSVCGDTSSGSSLLRVEVQSQPQPPQHMQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHVRRLPASSVGQADNGSWMVQDECGDKSKGNMSQSGSPQGPLTPLLLGGGSAKGLSSPGRNSVDAEDEQSDCRNWKGGLHHHLEADNHSL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01924 367 MobiDBLite consensus disorder prediction 142 156 - -
Pumo8g01924 367 MobiDBLite consensus disorder prediction 287 353 - -
Pumo8g01924 367 SUPERFAMILY Homeodomain-like 221 281 IPR009057 -
Pumo8g01924 367 MobiDBLite consensus disorder prediction 304 318 - -
Pumo8g01924 367 FunFam Myb family transcription factor 222 280 - -
Pumo8g01924 367 Pfam Myb-like DNA-binding domain 225 276 IPR001005 -
Pumo8g01924 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 220 280 IPR017930 -
Pumo8g01924 367 NCBIfam myb-like DNA-binding domain, SHAQKYF class 223 278 IPR006447 GO:0003677
Pumo8g01924 367 MobiDBLite consensus disorder prediction 109 141 - -
Pumo8g01924 367 MobiDBLite consensus disorder prediction 102 172 - -
Pumo8g01924 367 Coils Coil 63 83 - -
Pumo8g01924 367 Gene3D - 222 279 - -
Pumo8g01924 367 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 46 352 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01924 Pumo-Chr8 55708343 55710113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01924 27 273 G2-like Transcription Factor Family AT4G37180 42.366 6.35e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo8g01924 Myb_DNA-binding 1.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01924 - - gmx:100785723 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02015 4 27603327 27606186 Pumo8g01924 8 55708343 55710113 PCT