Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01915 ATGATCCAAGAACTGTTGGGTGGTGCTAGTGCTAGCCTCATAGCAGGAGAAAGAAAAATCTCCATTAATAACGGAGGTGGAGGAGCACTTCTACTAACACCACCCTCATCATCTTCTCCTTCTCCTCCATCTCCTTCTTGCACAACAAGTATCACCACCACCGCGACCGCGGCCACCACCGCCACCTCATCGAATTCAGAGAACCAAAATTTGAGGTGCCCTCGTTGTGATTCATCAAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTTTGCAAGACATGTCGCCGGTACTGGACCAAAGGCGGTGCTCTCAGGAATGTTCCCATCGGAGGTGGCTGCCGGAAAAGCAAAAACTCCGCCATGTCCAACTCGGTGGCAAAGCAAACGGCCGCCACAAAGATGAAAGTTGTGGCATCAGAGCTTGGAAGGTCACAAGGACTCTTCGACCAAGAGCTTCCACAAACCCCAATCCTGTGGGGTTCACCGCAAAATTCTCAACTGATGGCTTTACTAAGAGCTAGCCAAAACCCTAACCCTAACCCTAGTCCCATGTCAATTGCTGTCAAGGGAGAAGGGAACTTAATGGGATCTCACTCCCACATGGTGACTGAAGCCATTGTTGTTGAATCCTAG 654 0.4969 MIQELLGGASASLIAGERKISINNGGGGALLLTPPSSSSPSPPSPSCTTSITTTATAATTATSSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKNSAMSNSVAKQTAATKMKVVASELGRSQGLFDQELPQTPILWGSPQNSQLMALLRASQNPNPNPSPMSIAVKGEGNLMGSHSHMVTEAIVVES 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01915 217 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Pumo8g01915 217 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Pumo8g01915 217 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 61 166 IPR045174 GO:0003700|GO:0006355
Pumo8g01915 217 MobiDBLite consensus disorder prediction 31 51 - -
Pumo8g01915 217 Pfam Dof domain, zinc finger 69 125 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01915 Pumo-Chr8 55635811 55637698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01915 40 131 C2C2-Dof Transcription Factor Family AT5G65590 63.830 2.92e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo8g01915 zf-Dof 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01915 - - gmx:100800420 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01915 8 55635811 55637698 Pumo8g01915 8 55635811 55637698 ECH
Pumo8g01915 8 55635811 55637698 Pumo4g02031 4 28647569 28649129 PCT