Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01902 ATGTTTCTTCTTCTTCATCACCATACAAATCTCGCTATAGTCCTCACAATCTTCATAGCGTGCACAACAAGAGCACAAAACCTCACTTGCAATGGCGGCAAATGCGGGGATCAGATTCTTCAGTTCCCTTTTGGCTTCTCCCAAGGTTGTCCAATCAAACTTGACTGTTCCCACAACCAAGTCAAACTTGGCGAATTTCGGGTCCAAAACGTAACAAACAGCAACATATTCGTCAATCTCCCTGCAAAATGCAACCGTAACATGCAATCCATTCTTCCACTCTTCAGTGACAAATTTGCCCCAACGATTAACAATAGCTTTCTGGTGCAAGATTGTAAGGATGCGTTAGGTGGGTGTGTTATTCCTGCTTCTAGTTTTGTGGGCAGCCAGATTGATGTGGAGAGCTGCGATAACAAAAGTGCTAATATCAGTTGCTATTCGAAACAAGATGGTGTTGTGACATACGATGAATTGAACCGAACTAAGTGTAAGTACTTGTTCTCTGCGGTTTCTTTTGGACAGAGCAAGGAGAATGCGCTGCAGTTTCAGGTTGTTGAGTTGGAGTGGTGGCTTCATGGACAGTGTGATCAATGTTCTACAAACGCTACCTGCACACCGGTCCATCTCCAAGATGAGTTCCGGTGCCAGTGTATCGATGGTTTCATCGGAGACGGCTTCAAAAACGGCACCGGTTGCCGGAAAGCTTCGTCTTCAAGTTGCAGTGCTTCAACACTAACGTCCGGTGGATGTGGGAAAGCAACCAAAATCGGTGTTGTTGTTGGAGTGATCATAACTGGAGCTTTGGTGGTGGCTGGTCTGTTTCTTCTATGCTACTGTGCCAGGCGCCGTTCTACTTGCTTGAGAAAACATACCATGGTAAAGCGCCAATTACGTGAAGCTGCAGGCAACTCTAGTGTACCTTTCTATCCCTACAAAGAAATAGAAAAAGCCACAAATTCTTTCTCTGAGAAGCACAGGCTGGGAACTGGGGCATTTGGTACAGTTTATGCTGGAAAACTGCACAATGATGAGTGGGTTGCTATAAAGAAGTTAAGGCAAAGAGACACCAACAGTGCTGACCAAGTCATGAATGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCGAATTTAGTTCGCCTCTTAGGTTGCTGCATAGAGAAGGGAGAGCAGATTCTTGTTTATGAATATATGCAAAATGGAACACTTTCTCAGCACTTGCAAAGAGAGAGGAGTAAAGGACTACCGTGGACAATAAGACTTACCATTGCTACTGAAACTGCTATTGCTATAGCATATCTCCATTCTGCAATTCATCCCCCAATTTACCACAGAGACATAAAATCTAGTAATATTCTCTTGGATTATAGCTTCAAATCTAAAATAGCTGATTTTGGGCTTTCTAGGCTTGCATTGACAGAAACATCTCATATCTCAACCGCCCCACAAGGGACTCCAGGTTATGTAGATCCCCAATACCACCAGAACTTCCATCTTTCTGATAAAAGTGATGTCTACAGTTTTGGAGTAGTTTTGGTAGAGATAATAACTGCCATGAAAGTGGTTGATTTTGCTCGACCTAGGAGTGAGGTTAATTTAGCTGCACTTGCCGTTGATAGGATTAGGAGAGGTGCAGTAGATGAGATCATAGACCCTTTCCTTGAACCACATAGAGATGCTTGGACACTGTATTCTATTCATAAGGTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTAGTATGATGGAAGTAGTAGAGGAGTTAGAATACATTAGACGCAGTGGATGGGCAACTATGGATGAAACTCTCACGGCTTCACCGATTGGGTCCGCTAGTTCATCGCCTCGCCATGGAAGTGAGAAGTCACTGAGTGGTATAAAAAAAGCTGGTCAAGGGAGTGAGAGATTGATTGTTCAACAGAAGACTGAGAGTTTTTTGCAGTCTATGGAGGTCAAGGACAGCTCCCCTGTATCAGTGCATGATCCAATTCCTTGGTCAAGTGGACACAGCTCACCTTCATCAAACAGCTTGTTGGGAAATGTCATCCCTTGA 2067 0.4403 MFLLLHHHTNLAIVLTIFIACTTRAQNLTCNGGKCGDQILQFPFGFSQGCPIKLDCSHNQVKLGEFRVQNVTNSNIFVNLPAKCNRNMQSILPLFSDKFAPTINNSFLVQDCKDALGGCVIPASSFVGSQIDVESCDNKSANISCYSKQDGVVTYDELNRTKCKYLFSAVSFGQSKENALQFQVVELEWWLHGQCDQCSTNATCTPVHLQDEFRCQCIDGFIGDGFKNGTGCRKASSSSCSASTLTSGGCGKATKIGVVVGVIITGALVVAGLFLLCYCARRRSTCLRKHTMVKRQLREAAGNSSVPFYPYKEIEKATNSFSEKHRLGTGAFGTVYAGKLHNDEWVAIKKLRQRDTNSADQVMNEIKLLSSVSHPNLVRLLGCCIEKGEQILVYEYMQNGTLSQHLQRERSKGLPWTIRLTIATETAIAIAYLHSAIHPPIYHRDIKSSNILLDYSFKSKIADFGLSRLALTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFARPRSEVNLAALAVDRIRRGAVDEIIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPSMMEVVEELEYIRRSGWATMDETLTASPIGSASSSPRHGSEKSLSGIKKAGQGSERLIVQQKTESFLQSMEVKDSSPVSVHDPIPWSSGHSSPSSNSLLGNVIP 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01902 688 MobiDBLite consensus disorder prediction 652 688 - -
Pumo8g01902 688 Gene3D Laminin 183 233 - -
Pumo8g01902 688 Pfam Protein tyrosine and serine/threonine kinase 324 593 IPR001245 GO:0004672|GO:0006468
Pumo8g01902 688 FunFam Wall-associated receptor kinase-like 20 397 606 - -
Pumo8g01902 688 Gene3D Transferase(Phosphotransferase) domain 1 397 610 - -
Pumo8g01902 688 SUPERFAMILY Protein kinase-like (PK-like) 303 595 IPR011009 -
Pumo8g01902 688 ProSiteProfiles Protein kinase domain profile. 321 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01902 688 MobiDBLite consensus disorder prediction 611 625 - -
Pumo8g01902 688 SMART serkin_6 321 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01902 688 Gene3D Phosphorylase Kinase; domain 1 281 396 - -
Pumo8g01902 688 FunFam Wall-associated receptor kinase-like 14 288 396 - -
Pumo8g01902 688 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 669 IPR044652 GO:0004672
Pumo8g01902 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Pumo8g01902 688 ProSitePatterns Protein kinases ATP-binding region signature. 327 350 IPR017441 GO:0005524
Pumo8g01902 688 MobiDBLite consensus disorder prediction 611 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01902 Pumo-Chr8 55511872 55519504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01902 2 686 Receptor kinase-like Gene Family AT2G23450 55.791 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pumo8g01902 PK_Tyr_Ser-Thr 6.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01902 - - gmx:100779130 1181.78