Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01889 ATGGAAGTGCTTCCTTGTTCTGGTGTTCAATATGCTGGGGAATCTGATTGCCCTCAGCAGAGTTCAGGAACAGCATTTGTATACCAGGAACAACCTAATTGCCCTGAAAATGGCGAACAAGTCAACTTTGTAGCTCAACTGAATGAATCATCACATAAGATGCAAGGGCCTCAGATAGAAAGACAAGGTGATTTGTCAACTAATTCAGATTGCCAATGCATTGGAGCTTCATGTTGTGACTGTCAAGTGGATGACCAAAACGAATATTGTGGTTTCCATGATTTTGAAGAAGACATGATAAATGAACCTTCCTTGACATCTGACAACTATATCTCTGTTGTGGATACAATTGAAAGTGAATCACCAAACAACAGTAGGGAAGGAGACTTGTCATGTTCCGAACCCAAGTGGCTAGAGGGGGATGAATCTGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGCTGGTATCCGGTGTGCAAGGGCTGACTGGCCGTTATCAACTTTGAAAGCAAAACCAACTCATGACAGAAAGAAATATTTTGTTATATTTTTTCCACACACAAGGATTTATTCTTGGGCGGACATGCTGCTTGTTAGATCAATTAATGAGTATCCTCATCCTATTGCATATAAGACTCATCAGGTGGGATTGAAAATGGTAAAAGACTTAACTGTTGCACGGCGGTTTATAATGCAAAAGCTAGTTGTTGGCATGCTGAACATGGTCGATCAGTTTCATTTTAATGCTTTGACAGAAACTGCACGTTATGTGAAGGTCTGGAAGGAATTTGCCATGGAGGCTTCTCGTTGTAATTGTTATTCTGATTTTGGAAGAATGCTTCTAAAGTTTCATAATAGCATACTGCAGCACCATGTAAATGCTGACTGGTTACGGCATTCTTATCCCTCTTGGGCTGAAAGATGTCAGTGTGCAAATAGCGCTGAATCAGTAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGGGATCAATACTCTCTGGGATGCAGCTGCACCAATGCAACCAACATTAGGTTCTGAATGGAAAACCTGGAAGCATGATGTAGTGAAATGGTTTTCTACATCACCTTCCTTATCGAGCAGCAAAGACACCCAGCAACAGAGTTCTGATGATTTGTACCAAGCAAACCTTCAAGTTTGTAGAAAAAGGCCCAAACTTGAAGTTCGTCGTGCAGATACACATGCTTCACAAGTGGAAATCAAGGACCAAACTATTGCTCTTGAGGCTGACCCTGGCTTCTTTAAGAATCAGGACACGTTGTGCACATTAGCAGCCGAGTCTTGCAAACAGGAAGGTGTTAGGGAGGTGTCTATGGCAACTGATTCACCTAGTAATTTGGCCAACAAATGGAATGAAATTGTAGTTGAGGCTACTGATTCTGATTTCTTACATACCAAAGAAATGGAATCAACACCTACAAATGAAATGACTGTTGCAAAATCTGTAGAATCTGGTAGTAAGAATCGACAATGTATAGCTTATATTGAAGCAAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTATACTGTTGTGTACATTTGTCTTCTCGATTTTTGGGCAGCTCAACAAAATCTGAAAAGCCTGTTCCAGTTGATACTCCAATGTGTGAAGGTACAACTGTTCTGGGTACTAGATGTAAGCATCGTGCCCTACCTGGCTTTTTATTCTGTAAGAAACACCGGCCACATGCTGAAACAGAGCAGATCTCAAATTTACCCCAGAATACACTAAAGAGGAAACATGAAGAAAATTATACTGGTACAGAGGACATGTTCGGCAAAGACTTGGTATTGGTAAATGTTGAAAGTCCACTGCAAGTGGATCCAGTGTCATCCATTGGTGGTGATTCTGTACATGGAGAAAGCAACTTTAATGAGAAGCCCATGAATTCTGAAAATGATCATAATGCAATGGAGTCAATGCACTGTATAGGTTCTCCTCCCTATGATAACAAGAATCCTTGTAGGGAAGGTCCTAAACGGTATTGCTTGTACTGTGAAAGACACCTTCCAAGCTGGCTTAAGCGTGCAAGAAATGGGAAGAGTAGAATAGTATCAAAAGAAGTGTTCACAGAACTTTTGAGGGACTGCAGCTCATGGGAGCAAAAGGTACATCTGCATAAAGCATGTGAACTTTTTTACAGGCTATTCAAAAGCATTTTATCATTAAGAAACCCTGTTCCTAAGGATGTCCAATTCCAGTGGGCTTTGACTGAAGCCTCTAAAGATTCCAATGTAGGAGAGTTTTTTACAAAGTTAGTTCATAGTGAAAAGGCGAGAATCAAGTCAATATGGGGATTCAATGATGACATGGATATATCCTCTATCATGGAAGAACCACCTCTCTTGCCATCCACAGTTAATGATAACTATGATAAGGAAAATGCCATCAAGTGTAAGATATGCTCTGCAGAATTTCCTGATGACCAAGCACTTGGTAACCATTGGATGGACAGTCATAAAAAGGAGGCACAGTGGCTGTTTAGAGGTTATGCATGTGCCATTTGTCTGGATTCATTTACTAACAAAAAACTGTTGGAAACTCATGTTCAGGAGAGACACCATGTTCAATTTGTTGAACAATGCATGCTTCTCCAATGCATTCCTTGTGGGAGTCATTTTGGAAATACTGAACAATTATGGCAGCATGTTTTATCAGTTCATCCTGTTGATTTTAAACCATCGAAAGCTCCTGAGCAGCAAAGTTTCTCTACTGGCGAAGATTCTCCAGTAAAACATGATCAGGGAAATTCGGCCCCCTTGGAGAATAATTCTGAGAATACAGGTCGACATCACCAAGCTGCTCATATGGGGCCTAATCTGGCTAGCAGTCGCCCAGCAAAGAGGGGAGTTCGCTATTATGCATATAGATTAAAATCTGGCAGACTTAGCCGCCCTAGATTTAAAAAAAGTTTGGCAGCAGCATCATACAGGCTTAGAAATAAGGCTAATGCTAATTTAAAGCGATTCATTCAGGCAACAAACTCACTTGGCACAGGAGGAATAACCACACAACCTAATGTTACTGAAACAACAAATATTGGTAGATTGGCAGAACATCAATGCTCAGCTGTTTCAAAGATTTTGTTTTCAGAGATTCAGAAGACGAAACCTCGGCCCAACAATCTTGATATTTTATCAATTGCTCGCTCCGCTTGCTGCAAAGTTAGTCTTGTAGCCTCACTGGAGGAGAAATATGGAATTCTGCCTGAAAAGATCTATTTGAAGGCAGCCAAACTTTGCAGTGAGCATAATATTTTGGTAAATTGGAACCAGGAGGGGTTTATTTGTCCTAGAGGTTGTAATGTATCAAAGGATCAAGCTTTGCTCTCTCCTATAGCATCTCTTCCTAATAGTTCTGTAATGCCTAAATCTGTGAATTTATCTGATCCTGCAAGTGATGAGTGGGAGGTGGATGAATTTCACTGCATCATCAATTCACGTACTTTAAAATTAGGTTCACTGCAAAAAGCTGTTGTCTTGTGTGATGACATTAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTAGTAGATCAAGAACTTACGCATTCTCTTCATATGAATGGGAGTAGTGGACAAAATATAAACTCTTCTATGCCTTGGGAGACCTTTACCTATGTTACAAAGCCAATGCTTGATCAATCCCTTAGTCTTGATTCAGAGAGTCTGCAATTGGGATGTGCCTGCTCATACACTACCTGCTGTCCCGAAACTTGTGATCATGTATACCTTTTTGGCAATGATTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGATGAGAATGGTCGAATAATCTTGGAGGAAGGTTATCTTGTCTATGAGTGTAATCATATGTGCAGATGCAATAAATCCTGTCCAAACAGAGTATTGCAGAATGGAGTACGAGTCAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCAGTAAGGGCTGGTGAAGCTATTCTACGTGGCACATTTGTGTGTGAATACATTGGAGAAGTTTTAGATGTGCAGGAAGCACGTGATAGGCGCAAGAGATATGGCACAGAGCATTGCAGTTATTTCTATGACATCGATGCGCGTGTTAATGATATGAGCAGATTGATTGAAGGACAAGCTCAATATGTAATTGATGCTACTAAGTTTGGAAATGTCTCAAGATTTATCAATCATAGCTGCTCACCAAATCTTGTCAATCACCAAGTTCTTGTAGAGAGTATGGATTGTGAACGTGCACATATTGGTTTTTATGCAAGTCGAGATATTGCTTTGGGTGAAGAGCTAACATACGACTATCAGTACGAGCTTGTGCCTGGGGAAGGATCTCCTTGTCTTTGCTGA 4398 0.4075 MEVLPCSGVQYAGESDCPQQSSGTAFVYQEQPNCPENGEQVNFVAQLNESSHKMQGPQIERQGDLSTNSDCQCIGASCCDCQVDDQNEYCGFHDFEEDMINEPSLTSDNYISVVDTIESESPNNSREGDLSCSEPKWLEGDESVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHDRKKYFVIFFPHTRIYSWADMLLVRSINEYPHPIAYKTHQVGLKMVKDLTVARRFIMQKLVVGMLNMVDQFHFNALTETARYVKVWKEFAMEASRCNCYSDFGRMLLKFHNSILQHHVNADWLRHSYPSWAERCQCANSAESVELLKEELFDSILWNGINTLWDAAAPMQPTLGSEWKTWKHDVVKWFSTSPSLSSSKDTQQQSSDDLYQANLQVCRKRPKLEVRRADTHASQVEIKDQTIALEADPGFFKNQDTLCTLAAESCKQEGVREVSMATDSPSNLANKWNEIVVEATDSDFLHTKEMESTPTNEMTVAKSVESGSKNRQCIAYIEAKGRQCVRWANDGDVYCCVHLSSRFLGSSTKSEKPVPVDTPMCEGTTVLGTRCKHRALPGFLFCKKHRPHAETEQISNLPQNTLKRKHEENYTGTEDMFGKDLVLVNVESPLQVDPVSSIGGDSVHGESNFNEKPMNSENDHNAMESMHCIGSPPYDNKNPCREGPKRYCLYCERHLPSWLKRARNGKSRIVSKEVFTELLRDCSSWEQKVHLHKACELFYRLFKSILSLRNPVPKDVQFQWALTEASKDSNVGEFFTKLVHSEKARIKSIWGFNDDMDISSIMEEPPLLPSTVNDNYDKENAIKCKICSAEFPDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNTEQLWQHVLSVHPVDFKPSKAPEQQSFSTGEDSPVKHDQGNSAPLENNSENTGRHHQAAHMGPNLASSRPAKRGVRYYAYRLKSGRLSRPRFKKSLAAASYRLRNKANANLKRFIQATNSLGTGGITTQPNVTETTNIGRLAEHQCSAVSKILFSEIQKTKPRPNNLDILSIARSACCKVSLVASLEEKYGILPEKIYLKAAKLCSEHNILVNWNQEGFICPRGCNVSKDQALLSPIASLPNSSVMPKSVNLSDPASDEWEVDEFHCIINSRTLKLGSLQKAVVLCDDISFGKESIPVICVVDQELTHSLHMNGSSGQNINSSMPWETFTYVTKPMLDQSLSLDSESLQLGCACSYTTCCPETCDHVYLFGNDYDDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECNHMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDVQEARDRRKRYGTEHCSYFYDIDARVNDMSRLIEGQAQYVIDATKFGNVSRFINHSCSPNLVNHQVLVESMDCERAHIGFYASRDIALGEELTYDYQYELVPGEGSPCLC 1465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01889 1465 Pfam Pre-SET motif 1180 1312 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo8g01889 1465 SUPERFAMILY SET domain 1169 1465 IPR046341 -
Pumo8g01889 1465 Pfam Zinc finger C2H2-type, 3 repeats 848 946 IPR040689 -
Pumo8g01889 1465 ProSitePatterns Zinc finger C2H2 type domain signature. 814 835 IPR013087 -
Pumo8g01889 1465 Pfam SET domain 1331 1451 IPR001214 GO:0005515
Pumo8g01889 1465 ProSiteProfiles Pre-SET domain profile. 1241 1317 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo8g01889 1465 Gene3D SET domain 1159 1456 IPR046341 -
Pumo8g01889 1465 ProSitePatterns Zinc finger C2H2 type domain signature. 882 903 IPR013087 -
Pumo8g01889 1465 ProSiteProfiles Zinc finger C2H2 type domain profile. 846 869 IPR013087 -
Pumo8g01889 1465 ProSiteProfiles SET domain profile. 1320 1452 IPR001214 GO:0005515
Pumo8g01889 1465 SMART preset_2 1177 1304 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo8g01889 1465 Gene3D Classic Zinc Finger 799 872 - -
Pumo8g01889 1465 SMART c2h2final6 846 869 IPR013087 -
Pumo8g01889 1465 SMART c2h2final6 812 835 IPR013087 -
Pumo8g01889 1465 SMART c2h2final6 880 903 IPR013087 -
Pumo8g01889 1465 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1465 - -
Pumo8g01889 1465 SMART set_7 1320 1458 IPR001214 GO:0005515
Pumo8g01889 1465 MobiDBLite consensus disorder prediction 912 946 - -
Pumo8g01889 1465 MobiDBLite consensus disorder prediction 910 960 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01889 Pumo-Chr8 55378759 55390742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01889 101 1465 C2H2 Transcription Factor Family AT2G23740 50.887 0.0 1365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo8g01889 Pre-SET 3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01889 - - gmx:100786757 2779.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01889 8 55378759 55390742 Pumo8g01889 8 55378759 55390742 ECH