Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01887 ATGTCCCAAGATTTTCAGCAAGGAATCTTCAGCTTCTCGAATGGGTTGGAGAGAGGAAGGGTGAGTCCGCAGCAGCAGATCCGGAGGGACAAAGTGAGGTTGCAAGGAGGGTTCGACGCGGCGGCGCCATTGGTAGGGATAGAGGAAGAGGAACCGGTGTACGAGACCGCCGGGATGTTGTCGGAGATGTTCAATTTTACGCCTGCGGCAGAATTGTTGGAGCAGCAGCAGCCGGTGACGGCGACGTTCCGGGCGGCAGCGAGGCAAGCCGGGGAGTGGTACGGAAACAGACAACAACAAGGGGTGAATATGATGATAAGTGGGTTGGGAGATTCGAAGAACGAAAACGGTGTTAACAACAACCAGCACCAGCATCAGCAGCAACAGATTTCAGGCATTAATGCTGACTCAGCAGCAGCCATGCAACTTTTTCTGATGAACCCTCAGACGAGGTCGCCTTCTCCTCCTCAAAGCCACCCTGCTCCTCCCTCAACTCTTCACATGTTGCTTCCAAATCCTTCTTCCAATTCCCTCCAAGGATTCACTGGTTCGGCCGCGGGAGGGTCTTTTGGTCAATTCACTTGGGTTCCGGAGAGTGCTCATCAACAAGGAGGCGTGGTGGAAGGGCAAGGTCTTTCGTTATCGTTGTCTTCTTCGCTGGAAGCAGCGAAAGCCGAGGAATTGAGGATGGGGGATAGTGGTTTTCTATATTACAATCATCAACAAGGAGGTGGAGGTGGAGGTGGAGGTCCTTCTTCTTCCGCGGTTCAGTTTCCCTACAAGAATAATAATCATCATCAAGCATTGCATTTGCAAGGGGCGATAGGACACGACAACAACCACCAGGGACATGTTGGGTTCGGGTCATCCTCGTTAGGTGTAGTCAATGTTCTCAGAAATTCCAAGTATGTGAAGGCTGCACAAGAGTTGCTGGAAGAGTTTTGCAGTGTTGGGAGGGGTCAGTTTAAGAAGAGCAAGTTCAATAGACAGAATTCGAACCCTAATTCAAATCCCGGTGGTGGTGGTTCTTCGCCTTCATCAAAAGATGCTCCTCCTCCTCCTTTGTCAGCAGCTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCAATGCTTGACGAGGCATGTATTGTGGACAGGAGATACAACCACTACTGCGAGCAAATGCAAATGGTGGTGAACTCATTTGACCTGATGATGGGTTTTGGCGCGGCAGTGCCATACACAGCACTGGCGCAGAAAGCAATGTCTCGGCATTTCCGGTGCCTGAAGGACGCGATAATAGCGCAGCTGAAGCAAAGCTGTGAGCTACTAGGAGAGAAAGATGGGGCGGGGACCTCAGGTTTGACCAAGGGAGAGACCCCAAGGCTTAAGATGCTAGAGCAAAGCCTAAGACAGCAGAGAGCCTTCCACCAGATGGGCATGATGGAACAAGAAGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGTTCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGCCTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGACATGTACCAACAAGAACTTAAAGAAGCAGAGAGTGCAGAAGAAAGAGAAAAGAACCAAAGCAACGACAGCAATATTAGTGGGAACCAAGCACAAACTCCAACCACACCAGCAGCAGCGGCTACAACATCAACAGCAACAGCGCCACCACCACCAACAACGACAACAACAACAAAACCAACAGGCAAAAGATCCGATTCCATCAATGCCCCCGAAAGCGACACTTCACTCGTTGCAATGAATAATAGACAAGGCTTCTCGGAAAACCAAGCAACATCCACCACCACTACCTCCACCACTATCATGGCCTCCGTCAGCGCCACCGCCTCTGAGGTGGCGCCACCCGTGTCTCAGTGCTTCGACTCAGACCTGCCCCCACACAGATTAATGGCCACTGATGACACGTGTCGCTTGGTCACACCAGATTTTGGGACCGCATCTGCAACTGCAGCTGACATTGGATCCACTCTCATTAGGTTTGGGACCACACCCGGTGACGTGTCACTCACCCTAGGGCTTCGCCACGCCGGGAACATGCCCGAGAAAACTCCTTTCTCTGTTAGAGACTTTGGAGCCATTTAA 2220 0.5117 MSQDFQQGIFSFSNGLERGRVSPQQQIRRDKVRLQGGFDAAAPLVGIEEEEPVYETAGMLSEMFNFTPAAELLEQQQPVTATFRAAARQAGEWYGNRQQQGVNMMISGLGDSKNENGVNNNQHQHQQQQISGINADSAAAMQLFLMNPQTRSPSPPQSHPAPPSTLHMLLPNPSSNSLQGFTGSAAGGSFGQFTWVPESAHQQGGVVEGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNHQQGGGGGGGGPSSSAVQFPYKNNNHHQALHLQGAIGHDNNHQGHVGFGSSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKSKFNRQNSNPNSNPGGGGSSPSSKDAPPPPLSAADRIEHQRRKVKLLSMLDEACIVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAIIAQLKQSCELLGEKDGAGTSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAESAEEREKNQSNDSNISGNQAQTPTTPAAAATTSTATAPPPPTTTTTTKPTGKRSDSINAPESDTSLVAMNNRQGFSENQATSTTTTSTTIMASVSATASEVAPPVSQCFDSDLPPHRLMATDDTCRLVTPDFGTASATAADIGSTLIRFGTTPGDVSLTLGLRHAGNMPEKTPFSVRDFGAI 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01887 739 Pfam Associated with HOX 297 429 IPR006563 -
Pumo8g01887 739 CDD homeodomain 483 544 IPR001356 GO:0003677
Pumo8g01887 739 SMART HOX_1 483 547 IPR001356 GO:0003677
Pumo8g01887 739 MobiDBLite consensus disorder prediction 568 621 - -
Pumo8g01887 739 MobiDBLite consensus disorder prediction 325 357 - -
Pumo8g01887 739 SUPERFAMILY Homeodomain-like 485 550 IPR009057 -
Pumo8g01887 739 MobiDBLite consensus disorder prediction 107 131 - -
Pumo8g01887 739 ProSiteProfiles 'Homeobox' domain profile. 480 543 IPR001356 GO:0003677
Pumo8g01887 739 Coils Coil 546 569 - -
Pumo8g01887 739 Gene3D - 486 548 - -
Pumo8g01887 739 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 152 567 - -
Pumo8g01887 739 MobiDBLite consensus disorder prediction 325 344 - -
Pumo8g01887 739 FunFam BEL1-like homeodomain protein 4 486 548 - -
Pumo8g01887 739 Pfam Homeobox KN domain 500 539 IPR008422 GO:0003677|GO:0006355
Pumo8g01887 739 MobiDBLite consensus disorder prediction 553 621 - -
Pumo8g01887 739 MobiDBLite consensus disorder prediction 553 567 - -
Pumo8g01887 739 SMART prehox3 292 431 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01887 Pumo-Chr8 55348318 55356025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01887 1 530 Homeobox Transcription Factor Family AT4G36870 50.340 4.13e-142 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo8g01887 POX 5.2e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01887 - - gmx:100786231 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01887 8 55348318 55356025 Pumo8g01887 8 55348318 55356025 ECH
Pumo4g02072 4 29413679 29421838 Pumo8g01887 8 55348318 55356025 ECH
Pumo8g01887 8 55348318 55356025 Pumo4g02072 4 29413679 29421838 PCT