Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01886 ATGGGTTGGTTTACCAAGTTGCTTAAGGGTTCTGATCATAAAATTTCACGCGGACAATACCATGGCACATATGGAGAGGACAGAATTTGGGATAATCATCATAGTTCAATGGATGAGTTAACAGATATTGAGAAAGAAGACATTGACCGGGCAATTGCACTTTCTCTGTCAGAGGAGGATCATAAAGGGAAAAAAGTTGTTGATTATGACTCTCAATCTGAAGATGAGGAACTTTGTAAAATTGATAATGAGGAAGATGAACATCTTGTTAAAGTTCATCTAGATGAAGATGAACATCTTGCCAAAATTCAACAAGAAGAAGATGAACGTCTTGCTAAAATTCAACAAGAAGAAGAAGAACGTCTTGCTAAAATTCAACAAGAAGATGAACGTCTTGCTAAAATTCAACAAGAAGATGAACATCTTGCTAAAGCTCAGCTTGAGGAAGATGAGCAACTTGCTAGGGCTATTCAAGAAAGTTTGAATATTGGTTCTCCTCCTCGACATGACAATGATTCTTCAGTTCTATCTTTTCCTCACCCCTTCCCCCCTGGATACAGAATCTGTGCTGGATGCAAGACTGAGATTGGCCAAGGAAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCAGAATGCTTCTGCTGCCAAGCATGCCATCTGCCAATCACTGATTATGAGTTTTCCCTGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGAGAAGCATCACCCAAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTCCTCGTTGTTGTAGCTGTGAAAGAATGGAGCCGAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTTTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCTATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTATGCTTGTCAGAAGAGCAAACTGTCACCACTATTTCAAGGAGGCCAAGGATTGGAGCAGGCTACCGAGTCATAGACATGATAACTGAACCTTATAAGCTGATCCGTCGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCACGAGATGATGCATGCATGGCTTAGGCTTAAAGGTTATCCTAACCTTAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGCTCTATTCTGGATCTGGGAATGACGGTGCATCATCATCAGCATCATCTTCATCTTCATCACCTTCCTCCTCTTCTGCTTCATCAAAAAAGGGTAAACGGTCTGACTTTGAGAAGAAACTCGGTGATTTTTTTAAACACCAGATTGAGTCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATTGGGTAACCAAGCAATGAACAAGTATGGGCTTAAAAGGACCCTTGACCATATCCATATGACAGGAAGTTTTCCATATTGA 1677 0.4085 MGWFTKLLKGSDHKISRGQYHGTYGEDRIWDNHHSSMDELTDIEKEDIDRAIALSLSEEDHKGKKVVDYDSQSEDEELCKIDNEEDEHLVKVHLDEDEHLAKIQQEEDERLAKIQQEEEERLAKIQQEDERLAKIQQEDEHLAKAQLEEDEQLARAIQESLNIGSPPRHDNDSSVLSFPHPFPPGYRICAGCKTEIGQGRFLSCMGGVWHPECFCCQACHLPITDYEFSLSSNRPYHKSCYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRVIDMITEPYKLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGSGNDGASSSASSSSSSPSSSSASSKKGKRSDFEKKLGDFFKHQIESDTSSAYGDGFRLGNQAMNKYGLKRTLDHIHMTGSFPY 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01886 558 FunFam Protein DA1-related 1 183 242 - -
Pumo8g01886 558 ProSiteProfiles LIM domain profile. 187 247 IPR001781 -
Pumo8g01886 558 CDD LIM_DA1 189 241 - -
Pumo8g01886 558 Coils Coil 100 120 - -
Pumo8g01886 558 Gene3D Cysteine Rich Protein 183 247 - -
Pumo8g01886 558 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 148 161 IPR003903 -
Pumo8g01886 558 SMART uim 43 62 IPR003903 -
Pumo8g01886 558 SMART uim 148 167 IPR003903 -
Pumo8g01886 558 Pfam Protein DA1 338 553 IPR022087 -
Pumo8g01886 558 Pfam LIM domain 189 244 IPR001781 -
Pumo8g01886 558 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 272 - -
Pumo8g01886 558 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 214 - -
Pumo8g01886 558 MobiDBLite consensus disorder prediction 478 500 - -
Pumo8g01886 558 CDD UDM1_RNF168_RNF169-like 98 155 - -
Pumo8g01886 558 MobiDBLite consensus disorder prediction 478 504 - -
Pumo8g01886 558 PANTHER PROTEIN DA1-RELATED 2 3 558 IPR045218 -
Pumo8g01886 558 SMART lim_4 188 240 IPR001781 -
Pumo8g01886 558 ProSitePatterns LIM zinc-binding domain signature. 189 223 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01886 Pumo-Chr8 55297417 55303923 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo8g01886 DA1-like 1.1e-106 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01886 - - gmx:100817969 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01886 8 55297417 55303923 Pumo8g01886 8 55297417 55303923 ECH
Pumo4g02073 4 29468917 29475030 Pumo8g01886 8 55297417 55303923 ECH
Pumo8g01886 8 55297417 55303923 Pumo4g02073 4 29468917 29475030 PCT