Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01879 ATGGCTGTCTTCTTTCCCTTTCTTCCTCTCCGTTCTCAGATTCTTTGTCTTGCACTCATGTTTTTCACTAATATCGCAGCTCAATCACAACAGACCAATGGAACAAACTTTTCTTGCCCTGTTGATTCCCCACCTTCATGTGAAACCTATGTAACATACATTGCCCATTCTCCAAATTTTTTGAGTCTAACCAGCATATCCAATATATTTGACACGAGTCCTTTATCCATTGCCAGAGCCAGTAACTTAGAGCCCAAGGATGACAAGCTGATCCCAGGCCAAGTCTTACTGATACCAGTTACCTGTGGCTGCACAGGAAACCGCTCTTTTGCCAATATCTCCTATGAGATCAACCAAGGTGATAGCTTCTACTTTGTTGCCACCACTTCATACGAGAATCTCACAAATTGGCGTGTAGTGATGGATTTAAACCCCAGTCTAAGTCCAAATACATTGCCAATAGGCATCCAAGTAGTATTTCCTTTATTCTGCAAATGCCCTTCAAAGAATCAGTTGGACAAAGGGATAAAGTACCTGATTACTTACGTGTGGCAGCCCAATGACAATGTTTCCCTTGTAAGTGACAAGTTTGGTGCATCACCAGAGGACATATTGGGTGAAAACAACTATGGTCAGAACTTCACTGCTGCAAACAACCTTCCAGTTCTGATCCCAGTGACAGGCTTGCCAGTTCTTGCTCAATCTCCTTCAGATGGAAGAAAAGGAGGGATTCGTCTTCCGCTTATAATTGGTATTAGCTTGGGATGTACACTACTGGTTGTGGTTTTAGCAGTATTACTGGTGTATGTATATTGTCTGAAAATGAAGAGTTTGAATAGGAGTGCTTCGTCAGCTGAAACTGCAGATAGGCTACTTTCTGGAGTTTCAGGCTATGTAAGTAAGCCTACCATGTATGAAACTGATGCGATCATGGAAGCTACCATGAACCTCAGTGAGCAGTGCAAGATTGGGGAATCAGTGTACAAGGCAAACATAGAGGGTAAGGTTTTGGCAGTAAAAAGATTCAAGGAAGATGTCGCGGAGGAGCTGAAAATTCTGCAGAAGGTGAATCATGGAAATCTGGTGAAATTAATGGGTGTCTCATCAGACAATGATGGAAATTGTTTTGTGGTTTATGAATATGCTGAAAATGGGTCTCTTGATGAGTGGCTGTTCTCCAAGTCTTGTTCAGACACATCAAATTCAAGAGCTTCCCTTACATGGTGTCAGAGGATAAGCATAGCAGTGGATGTTGCAATGGGTCTGCAGTACATGCATGAACATGCTTATCCAAGAATAGTCCACAGGGACATCACAAGCAGTAATATCCTTCTTGACTCGAACTTTAAGGCCAAGATAGCAAATTTCTCCATGGCAAGAACTTTTACCAACCCCATGATACCAAAAATAGATGTCTTTGCATTTGGGGTGGTTCTGATAGAGTTGCTTACTGGCAGGAAAGCCATGACAACCAAAAAAAATGGTGAGGTGGTTATGTTGTGGAAGGATATTTGGAAAATCTTTGATCAGGAAGAGAATAGAGAGGAGAGGCTCAGAAAATGGATGGATCCTGAGTTAGAGAGTTATTATCCTATAGATTATGCTCTCAGCTTGGCCTCCTTGGCAGTGAAATGTACTGCAGATAAGTCTTTGTCCAGACCAACCATTGCAGAAATTGTGCTTAGCCTCTCCCTTCTCACTCAACCATCTCCCGCGACATTGGAGAGATCCTTGACTTCTTCTGGATTAGATGTAGAAGCTACTCAAATTGTCACTTCCATAGCAGCTCGTTGA 1794 0.4236 MAVFFPFLPLRSQILCLALMFFTNIAAQSQQTNGTNFSCPVDSPPSCETYVTYIAHSPNFLSLTSISNIFDTSPLSIARASNLEPKDDKLIPGQVLLIPVTCGCTGNRSFANISYEINQGDSFYFVATTSYENLTNWRVVMDLNPSLSPNTLPIGIQVVFPLFCKCPSKNQLDKGIKYLITYVWQPNDNVSLVSDKFGASPEDILGENNYGQNFTAANNLPVLIPVTGLPVLAQSPSDGRKGGIRLPLIIGISLGCTLLVVVLAVLLVYVYCLKMKSLNRSASSAETADRLLSGVSGYVSKPTMYETDAIMEATMNLSEQCKIGESVYKANIEGKVLAVKRFKEDVAEELKILQKVNHGNLVKLMGVSSDNDGNCFVVYEYAENGSLDEWLFSKSCSDTSNSRASLTWCQRISIAVDVAMGLQYMHEHAYPRIVHRDITSSNILLDSNFKAKIANFSMARTFTNPMIPKIDVFAFGVVLIELLTGRKAMTTKKNGEVVMLWKDIWKIFDQEENREERLRKWMDPELESYYPIDYALSLASLAVKCTADKSLSRPTIAEIVLSLSLLTQPSPATLERSLTSSGLDVEATQIVTSIAAR 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01879 597 Pfam Protein tyrosine and serine/threonine kinase 342 462 IPR001245 GO:0004672|GO:0006468
Pumo8g01879 597 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 15 570 - -
Pumo8g01879 597 SUPERFAMILY Protein kinase-like (PK-like) 304 563 IPR011009 -
Pumo8g01879 597 ProSitePatterns Tyrosine protein kinases specific active-site signature. 433 445 IPR008266 GO:0004672|GO:0006468
Pumo8g01879 597 FunFam Os07g0541700 protein 382 471 - -
Pumo8g01879 597 ProSiteProfiles LysM domain profile. 51 98 IPR018392 -
Pumo8g01879 597 Gene3D Transferase(Phosphotransferase) domain 1 382 465 - -
Pumo8g01879 597 ProSiteProfiles Protein kinase domain profile. 285 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01879 597 Gene3D Phosphorylase Kinase; domain 1 296 381 - -
Pumo8g01879 597 Gene3D Transferase(Phosphotransferase) domain 1 466 576 - -
Pumo8g01879 597 Pfam LysM domain 62 99 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01879 Pumo-Chr8 55193594 55195639 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01879 81 566 Receptor kinase-like Gene Family AT3G21630 31.676 4.12e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pumo8g01879 PK_Tyr_Ser-Thr 6.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01879 - - gmx:100301877 1105.89