Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01874 ATGACGAGTGGTTTTGGGGAATCAACGAGAGCATCTGCTCCGAGCCCATCATGCTCGGGGAACAGTTCAAACGATGCTGGTGATTTCGAATGCAACATATGCTTCGATTTGGCTCAAGACCCTGTGATCACACTCTGTGGTCACCTATTCTGTTGGCCATGCCTCTATAGGTGGCTCCATCATCACTCCCATTCTCAAGAGTGCCCTGTTTGCAAGGCCCTTGTGCAGGAAGAGAAATTGGTGCCTCTTTATGGAAGGGGAAAAACACAGACTGATCCCAGGACCAAATCATATCCTGGAATGGAGATCCCCCACCGTCCTTCGGGGCAGAGGCCACAAACTGCTCCGCCCCCGCCACCTCCTGAGGCCAACCCTTTTGGGAGTTATGGGTTTGGACTCATGGGAGGGTTCATTCCCATGGCAACTGCCAGATTTGGAAACTTCACGCTTTCCACTGCCTTTGGCGGGTTTATCCCTTCACTGCTCAACATTCATTTCCATGGCTTTCAGGATGCCACTGTCTATGGGACAACGTCTGGTTACCCCTTTGGGTTTAATGGCTTTCATGGAGGGAACACACGGGGTTTTTCACAGGGAACAGGCCAAGTGCAGCGGCAGGAGGACAATGTTTTGAAGAATCTGCTTATGTTGATTGGATTTCTTGTCCTTCTTACGGTTATTTTTGTGTGGTAA 693 0.5022 MTSGFGESTRASAPSPSCSGNSSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPHRPSGQRPQTAPPPPPPEANPFGSYGFGLMGGFIPMATARFGNFTLSTAFGGFIPSLLNIHFHGFQDATVYGTTSGYPFGFNGFHGGNTRGFSQGTGQVQRQEDNVLKNLLMLIGFLVLLTVIFVW 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01874 230 MobiDBLite consensus disorder prediction 84 124 - -
Pumo8g01874 230 MobiDBLite consensus disorder prediction 1 20 - -
Pumo8g01874 230 SUPERFAMILY RING/U-box 27 84 - -
Pumo8g01874 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 94 IPR013083 -
Pumo8g01874 230 SMART ring_2 31 71 IPR001841 -
Pumo8g01874 230 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 14 85 - -
Pumo8g01874 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 224 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pumo8g01874 230 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Pumo8g01874 230 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Pumo8g01874 230 MobiDBLite consensus disorder prediction 110 124 - -
Pumo8g01874 230 CDD RING-HC_AtRMA-like 29 73 - -
Pumo8g01874 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01874 Pumo-Chr8 55138299 55140007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01874 21 228 C3H Transcription Factor Family AT2G23780 63.850 1.86e-89 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01874 K10666 - gmx:100814783 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01874 8 55138299 55140007 Pumo8g01874 8 55138299 55140007 ECH