Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01863 ATGAATCATCGACCTTTCCAAGACCACATGATGCTCATGTCTCAGTTATTCCCTGCTGATGCATACACTCAAATAATTGCTCAACAAGGGGAGACTAAGAAGCCAAGACGCCGTCGTAACAAGAAGAACAAAGGAGGAGAAAACGGTGCCTCGGAAGCCAACAAGAAGAGGAAGCTTAGTGTGGAGCAAGTTAATCTCCTTGAGCAGAACTTTGGAAATGAGCATAAGCTTGAATCCGAAAGGAAAGACAAGCTCGCAATGGAGCTTGGTTTGGACCCTCGACAAGTTGCTGTGTGGTTTCAAAACAGAAGAGCTCGATGGAAGAACAAAAAGTTGGAAGAAGAGTACTCAAACCTTAAGAAAACTCATGAAGCCACCTTGCTTGAGAAATGTCGCCTCGAGAGTGAGGTGTTGAAGCTCAAAGACCAACTTTCAGAGGCAGAGAAGGAGATTCAGAGGCTGCTAGAGAGTGCTGATAGAGTCCCAAGCAACAGTTCTAGTTCGTCACAGTCACAATCAATGGAAGCTGTGGACCCACCATTCTTTGGGGAATTTGGAGTTGATGGATATGAGGATGATGTGTTTTACGTGCCTGAGACCCATTACATCAACGGCATGGAATGGATTAATTTGTATATGTAA 642 0.4455 MNHRPFQDHMMLMSQLFPADAYTQIIAQQGETKKPRRRRNKKNKGGENGASEANKKRKLSVEQVNLLEQNFGNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKTHEATLLEKCRLESEVLKLKDQLSEAEKEIQRLLESADRVPSNSSSSSQSQSMEAVDPPFFGEFGVDGYEDDVFYVPETHYINGMEWINLYM 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01863 213 Coils Coil 102 157 - -
Pumo8g01863 213 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Pumo8g01863 213 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Pumo8g01863 213 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Pumo8g01863 213 CDD homeodomain 55 111 IPR001356 GO:0003677
Pumo8g01863 213 MobiDBLite consensus disorder prediction 44 59 - -
Pumo8g01863 213 MobiDBLite consensus disorder prediction 155 175 - -
Pumo8g01863 213 MobiDBLite consensus disorder prediction 158 175 - -
Pumo8g01863 213 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Pumo8g01863 213 SMART HOX_1 53 114 IPR001356 GO:0003677
Pumo8g01863 213 FunFam homeobox-leucine zipper protein ATHB-40 49 118 - -
Pumo8g01863 213 Gene3D - 46 119 - -
Pumo8g01863 213 MobiDBLite consensus disorder prediction 28 59 - -
Pumo8g01863 213 Pfam Homeodomain 55 109 IPR001356 GO:0003677
Pumo8g01863 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 171 IPR045224 GO:0003700
Pumo8g01863 213 SUPERFAMILY Homeodomain-like 54 118 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01863 Pumo-Chr8 54936630 54938594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01863 1 213 Homeobox Transcription Factor Family AT4G36740 57.207 1.06e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pumo8g01863 Homeodomain 9.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01863 K09338 - gmx:100809616 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01863 8 54936630 54938594 Pumo8g01863 8 54936630 54938594 ECH
Pumo8g01863 8 54936630 54938594 Pumo4g02088 4 29765901 29767565 PCT