Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01860 ATGAGAGTTCCCGTTCCCTCATCCCCACAGCCCAACCCAAAACCCACCAATAACCTAGTCCGTACCATTGCCCTTCCCAACCTCAACAACAATAGCAACACGGGCCTGTGCTACGAGCCCACCTCTGTCCTCGACCTGTGCCGGAGCCCGAGCCCGGGCACCGAAAAGCCCACCGTCGTCACCAACTCCCAAGAGTGTCTCGACCTGGACGACCATGCGTTGCACAACTTGGATTGGGATTCCATCATGAAGGACTTGGGCTTAAACGACGACTCTGCCACCCCCGTTTTGAAAACTTTTCTCCACCCCGATGACGACGACAACAACCCATCATGCGACGACTTCACACCCTTCGACCACGCGCTTGAATTCACCGCTCTCTCCGACATCTACTCCAACCAAAACATCGGTGGTTTCGATTTCAACCACTTGGTTCACGACTTCAACCACCACCACCAACACAACAACGGCTTCGACTTCATCGAAGAGCTCATCCGCGCCGCCGATTGCTTCGACACCAAGCAGTTACACGTGGCGCAAGTGATATTGGAGCGGCTCAATCAACGGCTACGATCCCCCGTGGGAAAACCTCTCCAACGAGCAGCCTTTTACTTTAAAGAAGCTCTGCACTCTCTTCTCTCCGGTTCGAACCGGACCCCGAGGATTTCGTCCCTGGTGGAAATCGTGCAGAGTATCAGAACCTTCAAGGCCTTTTCGGGAATCTCACCGATCCCAATGTTCTCGATCTTCACCACCAATCAAATAGTTCTGGATCACGCTGCGTGCTCCTTCATGCACGTCATCGATTTCGACATCGGCCTAGGGATCCAATACGCTTCTCTCATGAAGGAGATTGCGGAGAACGCGGCGGAGTCGCCGGTGCTCCGAATCACCGCCGTTGTTCCCGAAGAGTTCGGCGTGGAGAGCACGCTCGTGCGCGAAAGCCTCGTGCAGTTCGCGCTCGAACTCAGGATCCAAGTCCAGGTCGAGTTCGTGCCCCTCCGAACCTTCGAGAATCTCTCCTTCAAGGCTGTGAAGTTCGTCGACGGCGAGAGCACCGCCGTGCTCTTGTCGCCGGCGATTTTCCGCCACCTCGGCAACGCTGCCGCGTTCCTGGCTGACGTGCGGAGGGTCTCGCCGAGCCTGGTGGTTTTCGTGGACGGCGAGGGGTGCGCGGAGACGGCCACGGCGTCGGCCGCTTCGTTCCGGCGCGGTGTTGTGAGCAGTTTGGAGTACTACTCTATGATGCTGGAGTCGCTGGATGCGTCGACGGTGGGAGGAGGAGGGGAGTGGGTGAGGAGAATCGAGATGATGCAGCTTCGGCCGAAGATTTTGGCGGCGGCGGAGAGCGCGTGGCGGCGGGTGCCGCCGTGGAGGGAGGCGTTTTACGGCTCGGGAATGAGGCCGGTGCAGTTAAGCCAGTTCGCGGATTTTCAAGCGGAGTGCTTGTTAGCGAAGTCTCAAATCAGAGGCTTCCACGTGGCAAAACGTCAGAACGAACTGGTGCTACTCTGGCATGATAGAGCGATGGTTGCCACGTCAGCATGGCGCTGTTAG 1557 0.5761 MRVPVPSSPQPNPKPTNNLVRTIALPNLNNNSNTGLCYEPTSVLDLCRSPSPGTEKPTVVTNSQECLDLDDHALHNLDWDSIMKDLGLNDDSATPVLKTFLHPDDDDNNPSCDDFTPFDHALEFTALSDIYSNQNIGGFDFNHLVHDFNHHHQHNNGFDFIEELIRAADCFDTKQLHVAQVILERLNQRLRSPVGKPLQRAAFYFKEALHSLLSGSNRTPRISSLVEIVQSIRTFKAFSGISPIPMFSIFTTNQIVLDHAACSFMHVIDFDIGLGIQYASLMKEIAENAAESPVLRITAVVPEEFGVESTLVRESLVQFALELRIQVQVEFVPLRTFENLSFKAVKFVDGESTAVLLSPAIFRHLGNAAAFLADVRRVSPSLVVFVDGEGCAETATASAASFRRGVVSSLEYYSMMLESLDASTVGGGGEWVRRIEMMQLRPKILAAAESAWRRVPPWREAFYGSGMRPVQLSQFADFQAECLLAKSQIRGFHVAKRQNELVLLWHDRAMVATSAWRC 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01860 518 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 159 512 IPR005202 -
Pumo8g01860 518 Pfam GRAS domain family 161 517 IPR005202 -
Pumo8g01860 518 ProSiteProfiles GRAS family profile. 151 517 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01860 Pumo-Chr8 54908351 54910220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01860 67 517 GRAS Transcription Factor Family AT4G36710 55.485 2.72e-166 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo8g01860 GRAS 6.8e-79 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01860 - - gmx:100807470 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01860 8 54908351 54910220 Pumo8g01860 8 54908351 54910220 ECH
Pumo8g01860 8 54908351 54910220 Pumo4g02093 4 29815452 29817478 PCT