Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01853 ATGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAGGAAGAGGGTGTACGTGTAAAACACGGCGAGAAGAAGTGGAAATGCGATAAGTGCTCCAAGAAATACGCGGTTCAATCGGATTGGAAGGCTCATTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGCGGCACTTTGTTCTCGAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCTTTGGCAGAGGAAAGTGCCAGATCTCACACTCAGACTGTTGCAAAGGCTAGTTCTGAGTCAGATTCCAAGGCTGTGACCGCTGATTCATCGCCTCCGGCGGTGGCGGCTCCGCCTCCACCGCCACCTCCACCTGCACCGCCGGCTAGTTCTCAGTCAAACAGTGTTGCTGTTGCTGTACCATCGTCCGCTTTGCAGACACAAAATCTAGGTAGATAA 441 0.5215 MEAEAEVEQGGEEEGVRVKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSHTQTVAKASSESDSKAVTADSSPPAVAAPPPPPPPPAPPASSQSNSVAVAVPSSALQTQNLGR 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01853 146 Gene3D Classic Zinc Finger 10 74 - -
Pumo8g01853 146 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 102 IPR031140 -
Pumo8g01853 146 MobiDBLite consensus disorder prediction 1 20 - -
Pumo8g01853 146 SUPERFAMILY beta-beta-alpha zinc fingers 20 69 IPR036236 -
Pumo8g01853 146 MobiDBLite consensus disorder prediction 80 102 - -
Pumo8g01853 146 MobiDBLite consensus disorder prediction 107 124 - -
Pumo8g01853 146 MobiDBLite consensus disorder prediction 78 146 - -
Pumo8g01853 146 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01853 Pumo-Chr8 54865564 54866169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01853 19 143 IDZ Gene Family AT5G66730 61.940 4.22e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo8g01853 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01853 K25869 - gmx:100806404 173.326