Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01848 ATGTCTTCAGCTCCTCATAACTCTTCTCCTGATAACTCAACCCCTGATAATGCAACACCTGATAACAGCACCCCTGATGACTCTGACAACTCATCTTCACCACCATCACAATCACCACCTCCATCATCACCTCCACCATCATCACCACCTCCATCATCGCCACCTCCATCATCGCCACCTCCATCGTCACCACCACCATCATCGCCGCCTCCATCATCACCTCCACCCTCGTCACCACCACCATCATCTTCATCGTCACCACCACCATCATCTTCATCATCACCTCCACCATCAAACAATCAAAGCCCTCCATCACCCAATGGGTCCTCGCAGTCACCTCCTCCACCCTCCTTTGAATCACCGTCTCCTCCACACAAATCATTAGGACCTCCATCGTCCTCAAAAGGCTCTGGCAGTGGCAGTGGCAGCGGCAGTAACAGTGGCAGTGGCAGCAGCAGCAGCAGCAGCAGTAGCAGTGGCGGTGGCGCTGACGACAGCAGTAAGGCCATAGTTGGAGGAGTGCTTGGGGTAGGGAGTGTGCTTCTTATTTTGGTCATTGTTTGCGTTGTCTGCTCCAGGAGAAAGAAGAAGAAGAGAATGTACTATTATGGAGAGCAATCTATGGGAAAAGGGAATAATAACTATTACAATAGCGGGCAACACCAGAATTATTACGGAGGTCCACATGGGGACCATGTTGTGAGAATGCAAAATGGAATGGGTCCAGGTGGTGGCGGGTGGGGTGCACCGCCACCACCTCCTCCGATGATGAATAGTGCTGACATGAGCTCCAATTACTCAACGGGACCACCCCCTTTGCCTCCTCCATCTCCAACCCTTGCACTAGGCCTCAAAGGGGGCACCTTCTCTTATGAGGAACTAGCAGCTGCCACCAACGGATTCGCTGATGCAAATTTGATAGGACAAGGTGGCTTCGGTTATGTCCATAAGGGTGTCTTGCCTAGTGGAAAGGAAGTCGCAGTTAAGAGTCTTAAAGCAGGTAGTGGCCAAGGAGAGCGAGAGTTCCAAGCTGAGATTGACATCATTAGTCGTGTCCATCATCGCCATCTCGTGTCACTTGTTGGATACTCTATTTCTGGTGGCCAGAGGATGTTGGTCTATGAATTTATTCCCAATAACACATTGGAATATCATCTTCATGGAAAGGGTAGGCCTACCATGGATTGGCCAACTAGAATGCGGATTGCAATAGGATCCGCTAAAGGGCTTGCTTATCTTCATGAGGATTGTCATCCTCGTATTATCCATCGTGATATCAAGGCTGCGAATGTCCTCATTGATGATAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGGGTACCTAGCCCCAGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTTTTGGAACTCATAACTGGAAAGCGACCTGTTGATCACACAAATGCCATGGACGACAGCTTAGTAGATTGGGCTCGACCACTTCTGACTCGTGGACTAGAGGAGGATGGCAACTTTGGAGAGTTAGTTGATGCATTTTTGGAGGGAAACTACAATCCTCAAGAACTGGCAAGGATGGCAGCTTGTGCTGCTGCTAGCATTCGTCATTCTGGCAAGAAACGTCCAAAAATGAGCCAGATTGTAAGAATATTGGAAGGAGATGTCTCACTGGATGACTTGAAAGATGGGATGAGGCCAGGGCACAATGCTGTTTACAACTCTTCATCTAGCTCAGATCAGTATGATACAATGCAATACAATGCTGATTTACAAAAGTTTAGAAAGGCAGTGTTTTCTAATAGCCAAGATTTTGGCACCAGCAGTGGCTCAAGTGGTGAAGTGAGCCAGAAGCAGCAACGGCTTTAG 1935 0.4811 MSSAPHNSSPDNSTPDNATPDNSTPDDSDNSSSPPSQSPPPSSPPPSSPPPSSPPPSSPPPSSPPPSSPPPSSPPPSSPPPSSSSSPPPSSSSSPPPSNNQSPPSPNGSSQSPPPPSFESPSPPHKSLGPPSSSKGSGSGSGSGSNSGSGSSSSSSSSSGGGADDSSKAIVGGVLGVGSVLLILVIVCVVCSRRKKKKRMYYYGEQSMGKGNNNYYNSGQHQNYYGGPHGDHVVRMQNGMGPGGGGWGAPPPPPPMMNSADMSSNYSTGPPPLPPPSPTLALGLKGGTFSYEELAAATNGFADANLIGQGGFGYVHKGVLPSGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYSISGGQRMLVYEFIPNNTLEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDHTNAMDDSLVDWARPLLTRGLEEDGNFGELVDAFLEGNYNPQELARMAACAAASIRHSGKKRPKMSQIVRILEGDVSLDDLKDGMRPGHNAVYNSSSSSDQYDTMQYNADLQKFRKAVFSNSQDFGTSSGSSGEVSQKQQRL 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01848 644 MobiDBLite consensus disorder prediction 1 33 - -
Pumo8g01848 644 SUPERFAMILY Protein kinase-like (PK-like) 280 574 IPR011009 -
Pumo8g01848 644 MobiDBLite consensus disorder prediction 34 128 - -
Pumo8g01848 644 MobiDBLite consensus disorder prediction 239 273 - -
Pumo8g01848 644 FunFam proline-rich receptor-like protein kinase PERK1 279 376 - -
Pumo8g01848 644 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Pumo8g01848 644 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 177 619 IPR047117 -
Pumo8g01848 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Pumo8g01848 644 ProSiteProfiles Protein kinase domain profile. 301 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01848 644 MobiDBLite consensus disorder prediction 129 164 - -
Pumo8g01848 644 FunFam Proline-rich receptor-like protein kinase PERK1 377 585 - -
Pumo8g01848 644 Gene3D Transferase(Phosphotransferase) domain 1 377 585 - -
Pumo8g01848 644 Gene3D Phosphorylase Kinase; domain 1 281 376 - -
Pumo8g01848 644 Pfam Protein tyrosine and serine/threonine kinase 306 506 IPR001245 GO:0004672|GO:0006468
Pumo8g01848 644 SMART serkin_6 301 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01848 644 MobiDBLite consensus disorder prediction 1 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01848 Pumo-Chr8 54727615 54731218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01848 157 632 Trihelix Transcription Factor Family AT1G70460 50.408 6.23e-152 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Pumo8g01848 PK_Tyr_Ser-Thr 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01848 - - gmx:100777163 830.476