Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01847 ATGGGGGACTTCAACAACAACAACAACAACAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGCACCAAAGCCCAGAACCGTTCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCACCCAACCGGTCTCACAGCGAACCTGTTGAAGCTCTTCGAGCCTAGACCTCCCTTGGAGTACAAACCGCCTCCTGACAAACGGAAATGTCCACCGTTAACAGGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGATCCCGAATATGCTCCTCCTGTGCCAGAAACCGAAACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGACTAGAAAAGGGAGCTGCAAAGGCTGCTGAGGAGCTTGAGAAATATGATCCACATAATGACCCAAATGTGTCTGGTGATCCATACAAGACATTGTTTGTGGCTAAACTCAGTTACGAGACCACTGAAAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTGCAATCAAACGGGTTCGATTAGTTGCTGACAAAGACACAAATAAGCCCAAGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGCCGCCTAGGTGGTGGGCTTGGTACTACTAGAGTCGGGGGTGAAGAAGTTAATCAGCGACATTCTGGGAGGGAGCAACAACAGTCTCGTTCTGAAGAACCAAGAGTGCGGGAGGACCGACACGGTGATAGGTAA 828 0.4867 MGDFNNNNNNNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPDKRKCPPLTGMAQFVSKFAEPGDPEYAPPVPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGAIKRVRLVADKDTNKPKGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSRSEEPRVREDRHGDR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01847 275 SMART rrm1_1 146 219 IPR000504 GO:0003723
Pumo8g01847 275 MobiDBLite consensus disorder prediction 228 275 - -
Pumo8g01847 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 216 IPR000504 GO:0003723
Pumo8g01847 275 Gene3D - 132 257 IPR012677 -
Pumo8g01847 275 CDD RRM_snRNP70 144 234 IPR034143 GO:0030619
Pumo8g01847 275 FunFam U1 small nuclear ribonucleoprotein 70 kDa 132 257 - -
Pumo8g01847 275 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 48 136 IPR022023 -
Pumo8g01847 275 MobiDBLite consensus disorder prediction 248 275 - -
Pumo8g01847 275 SUPERFAMILY RNA-binding domain, RBD 133 245 IPR035979 GO:0003676
Pumo8g01847 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Pumo8g01847 275 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 66 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01847 Pumo-Chr8 54717194 54720662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01847 145 218 C2H2 Transcription Factor Family AT2G19380 33.784 5.03e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01847 K11093 - gmx:100800903 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01847 8 54717194 54720662 Pumo8g01847 8 54717194 54720662 ECH