Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01844 ATGCGGCCAACCGCAGTACGCGTCATCCCTTTTCACGAAATTTGGGAACCAACACACCGCTGGTCAGCACTCTTCGCAGCATGGGCCACTTTTCAAGAAATGACCTTACTCACAACGCTTCAGACTCGATCACACTATTTTGCCCGGTCCTTTCGTCTTCCCAACTTCTCTGAACTTCAACTCATCCATTTTCGTTTTTCCCCTTTGCCCCCTCCATTTCTTCACCGTTTCCAGTTTCCTCTGCCAGGGTTTGAAATGGAAGCGAATAACAAAGTGAAGAACGAGGATCCTGCAGCGGAGTCACCAACTTCGGTCCTCGAAGACGAGGATGTCTGTGCCATGAAAGAGGAAGTCAAGTTGGAAGAAGACTTGATTGCAGACGTTAAAGATGACGGGTCCTCACTCATATCGAAAACTATGATGGAGGAGGAACAGAAGTTAATTGAAGCTAGGATGAAGGAAGAGGAGGTGCAGTGTGAGGAGGCACCTGACCTTAATGACACGCAGTTTAACAAGTTGGATGAGCTTTTGACTCAAACCAAACTGTACTCTGAGTTTCTGCTGGAGAAAATGGATGATATCACACTTGCTGTGGGTGAACCAGAGATTGGAGAAGAGCAAGAGAGCAATCCTTCTGCAAAGAAGAAGGGTCGTGGATCAAAAAGAAAAGCTGCTTCCCAGTACAATACTAGGAAGGCCAAAAGGGCAGTTGCTGCCATGCTGACAAGATCTAAAGAAAGTGAGGGGACTGAAGATATGAATATGACTGAGGAAGAAAGAGTTGAGAAGGAGCAGAAAGAGCTCATGCCTTTACTGACAGGTGGAAAATTGAAGTCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACAATTGGATTTCTCTCACATCTAAAAGCGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTCTCAAACTGGGTGAATGAGATTTCCAGGTTTGCACCATCACTCCCTTCCATTATCTACCATGGGGACAAGAAGCAGAGAGATGAGATCCGAAGGAAACATATGCCAACTAGAGCAGTTGGCCCGAAATTTCCCATAGTCATAACTTCTTATGAGGTTGCTTTAAATGATGCTAAGAAATATTTAAGGTCGTACAATTGGAAATATCTTGTTGTTGATGAGGGACACAGACTCAAAAACTCAAAATGCAAATTAGTGAAGGCATTGAAATACATAAAAGTTGAAAACAAGCTTCTTCTAACTGGAACACCTCTGCAAAATAACTTGGCAGAACTATGGTCTTTATTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAATTTGAGTCGTGGTTTAATCTGTCAGGGAAGTGCAATAATGGAGCAACCAAGGAAGAACTGGAAGAGAAACGAAGAGCCCAAGTAGTAGCAAAGCTTCATGCCATTCTTCGACCTTTTCTTCTGCGTAGGATGAAGTCTGATGTTGAGATTATGTTGCCTCGGAAAAAGGAGATTATTATCTATGCAAACATGACTGAGCATCAGAAGAAATTGCAGGATCATTTAGTTAATAAGACGTTGGGGAACTATTTAAAAGAAAACATGTCAAGTGGACGTTCTGCACCTGCAAGTATACTTCGTAATTTAGCTATTCAACTTAGGAAGGTGTGTAACCATCCTGATCTCCTAGATTCAGCCTTTGACGATACATTTATGTATCCTCCTTTAAATGAGATAGTTGAACAATGTGGAAAATTCCATTTGCTTGATCGATTGCTGCAACGTTTATTTGCGAGGAATCACAAAGTTCTTATCTTCAGTCAGTGGACTAAAGTGTTAGATATAATGGATTATTATTTTAGTGAAAAGGGCTTTGAAGTTTGCAGGATTGATGGTGGTGTGAAACTGGATGAGAGGAAACGACAGATCCAGGAATTCAATGATCCAAATAGCAATTGCAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGATGGATTTACAAGCCATGGATAGATGTCATAGAATAGGCCAAACCAAACCTGTTCATGTTTATAGGCTCTCAACTGCTCAATCTATAGAGGGTCGCATGTTGAAAAGAGCTTTCAGCAAATTGAAGCTTGAGCATGTAGTGATTGAGAAAGGACAGTTTCATCAAGAACGTACAAAACCTGCCACTAGTATGGATGAAATAGAGGAAGATGATGTTTTGGCATTGCTTCGCGACGAAGAAACAGCCGAAGATAAAATGATTCATACAGATATTAGTGATGAAGACCTGGAGAAGATCTTGGATCGCAGTGATCTTGTCGTCAATGACTCAAACGATGCTAACTTCAAAGCTCCAGTGAGTACGTTTCCTCTTAAAGGGCCAGGGTGGGAGGTGGTGATTCCAACTGCGACTGGTGGCATGCTCTCTACTCTTAACAGCTAG 2550 0.4208 MRPTAVRVIPFHEIWEPTHRWSALFAAWATFQEMTLLTTLQTRSHYFARSFRLPNFSELQLIHFRFSPLPPPFLHRFQFPLPGFEMEANNKVKNEDPAAESPTSVLEDEDVCAMKEEVKLEEDLIADVKDDGSSLISKTMMEEEQKLIEARMKEEEVQCEEAPDLNDTQFNKLDELLTQTKLYSEFLLEKMDDITLAVGEPEIGEEQESNPSAKKKGRGSKRKAASQYNTRKAKRAVAAMLTRSKESEGTEDMNMTEEERVEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPSIIYHGDKKQRDEIRRKHMPTRAVGPKFPIVITSYEVALNDAKKYLRSYNWKYLVVDEGHRLKNSKCKLVKALKYIKVENKLLLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSGKCNNGATKEELEEKRRAQVVAKLHAILRPFLLRRMKSDVEIMLPRKKEIIIYANMTEHQKKLQDHLVNKTLGNYLKENMSSGRSAPASILRNLAIQLRKVCNHPDLLDSAFDDTFMYPPLNEIVEQCGKFHLLDRLLQRLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDPNSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEGRMLKRAFSKLKLEHVVIEKGQFHQERTKPATSMDEIEEDDVLALLRDEETAEDKMIHTDISDEDLEKILDRSDLVVNDSNDANFKAPVSTFPLKGPGWEVVIPTATGGMLSTLNS 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01844 849 Gene3D - 514 819 IPR027417 -
Pumo8g01844 849 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 289 458 IPR014001 -
Pumo8g01844 849 MobiDBLite consensus disorder prediction 200 233 - -
Pumo8g01844 849 Gene3D - 242 507 IPR038718 -
Pumo8g01844 849 SMART ultradead3 273 469 IPR014001 -
Pumo8g01844 849 FunFam Chromatin complex subunit A 106 518 747 - -
Pumo8g01844 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 510 804 IPR027417 -
Pumo8g01844 849 Pfam SNF2-related domain 280 580 IPR000330 GO:0005524|GO:0140658
Pumo8g01844 849 CDD SF2_C_SNF 592 726 - -
Pumo8g01844 849 FunFam ATP-dependent DNA helicase DDM1 271 517 - -
Pumo8g01844 849 Pfam Helicase conserved C-terminal domain 606 716 IPR001650 -
Pumo8g01844 849 Coils Coil 138 160 - -
Pumo8g01844 849 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 606 762 IPR001650 -
Pumo8g01844 849 SMART helicmild6 632 716 IPR001650 -
Pumo8g01844 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 508 IPR027417 -
Pumo8g01844 849 PANTHER SNF2/RAD54 HELICASE FAMILY 114 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01844 Pumo-Chr8 54697007 54703343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01844 263 737 RAD5 or RAD16-like Gene Family AT3G16600 24.310 3.33e-32 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo8g01844 SNF2_N 5.3e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01844 K19001 - gmx:100777687 1403.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01844 8 54697007 54703343 Pumo8g01844 8 54697007 54703343 ECH