Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01830 ATGGGACCCTGTACATGTGGTATGTTTCCCACCCAAACCAGTAATTCCTTCTCCATGCCCAACCACAAACCACTCTACGACGATTCCAACATGTATGAGTATGACTATTCCTTCACTCCCTTTTCCTCTTCCGTCGACTGCACCCTCTCCCTCGGAACCCCCTCCACCCGTTTCTCCGAAGACGAAGAAAAACGAAACCGCCATGAACGTCGCTCCGTTTCAAACTTCTGCTGGGACTTACTACAATCCAAACACACCCCTCAATCCCATACCAAGTCCTCCTCCCGAACCACCAATACCACCGACCCTCTCCTCGCTCGTCGCTGCGCCAATTGTGACACCACTTCAACTCCCCTCTGGAGAAATGGCCCCCGAGGCCCCAAGTCGCTGTGCAATGCGTGTGGGATTAGATTCAAGAAGGAGGAGAGAAGAGCGAGTGCGGCGGCGGCCACGTCGGCGGCGGCTTCTGGCGGCGTAATGGAATCGGCGCAGGTGTACAATAACTCGTGGTACGCACACCAGCAGAGTCAGAAGATGCAGTGCTTCTCGTCGCCGGGAATGGGGAACGAGTTCCGTTTCGTGGATGACGGCGATCGAGACGCCGATAACGGCATTCCGTTTCTCTCGTGGAGACTCAACGTCACGGACAGAACGAGCTTCGTTCACGACTTCACCAGATGA 681 0.5521 MGPCTCGMFPTQTSNSFSMPNHKPLYDDSNMYEYDYSFTPFSSSVDCTLSLGTPSTRFSEDEEKRNRHERRSVSNFCWDLLQSKHTPQSHTKSSSRTTNTTDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATSAAASGGVMESAQVYNNSWYAHQQSQKMQCFSSPGMGNEFRFVDDGDRDADNGIPFLSWRLNVTDRTSFVHDFTR 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01830 226 ProSitePatterns GATA-type zinc finger domain. 109 134 IPR000679 GO:0006355|GO:0043565
Pumo8g01830 226 ProSiteProfiles GATA-type zinc finger domain profile. 103 139 IPR000679 GO:0006355|GO:0043565
Pumo8g01830 226 PANTHER GATA TRANSCRIPTION FACTOR 18 2 226 IPR044272 GO:0003700|GO:0009908
Pumo8g01830 226 CDD ZnF_GATA 108 140 IPR000679 GO:0006355|GO:0043565
Pumo8g01830 226 Gene3D - 105 179 IPR013088 GO:0006355|GO:0008270
Pumo8g01830 226 SMART GATA_3 103 157 IPR000679 GO:0006355|GO:0043565
Pumo8g01830 226 Pfam GATA zinc finger 109 143 IPR000679 GO:0006355|GO:0043565
Pumo8g01830 226 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 106 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01830 Pumo-Chr8 54552384 54553972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01830 17 226 C2C2-Gata Transcription Factor Family AT3G50870 44.828 2.24e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo8g01830 GATA 5.2e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01830 - - gmx:100790571 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01830 8 54552384 54553972 Pumo8g01830 8 54552384 54553972 ECH
Pumo8g01830 8 54552384 54553972 Pumo4g02113 4 30149524 30151773 PCT