Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01827 ATGGCAATGAGAGGCCAAGATAAGGAAATAGAGATACCAACCACAACCACAACCACTTTAGGTTACAACCTTCCCAACCGAGATTCTTCTTCTTCCCCTTCCAAGCTCTCTTCTCCAACTGTTGGTGAAAGAAGTAGTAGTGATCATGATCAACCACCTCATCAAACTCACACATTAATCTTCAACGAACCACCTCACCAGAATCTCTATCCTCCTCCTCCTCCTCTTGCACCGCGCCAACCTCATAGACCCACATCAGATCCAGATCTAAGCACCCCAATTGCTCCCACATCGAACCCCTCAAGAACAGCGCCGCCTCAAACAACAACAACCTCGACCCCATCAATCAGGTACCGAGAATGTCTTCGGAACCACGCGGCAAGCATGGGGAGCCACGTGGTGGATGGCTGTGGAGAGTTCATGGCAAGTGGAGAAGAAGGCACGCCGGAATCACTAAGATGCGCCGCATGTGAGTGCCACCGCAACTTCCACAGAAAAGAGGTTGAAGGAGAATTACAACCGCCACCACCACCACAACCACAACATGTTCCAAATTATCACCACAGCTACTACCCCAACAAGCACAACGGTCACCTTTACTACCCTACACCCTCTTCTTCTTCCCTCCATCATAGATTGGTTGCCACTACTGCTACACCAAGCTTGGTCCCCCCAGTGATGATGGCCTTTGGAGGCCCAGCTGAGTCCTCAAGTGAAGATCTCAACATGTTTCAGTCCAACACTGGAGCACAGTTGTCAGTGCAGGCACCACTTTCTTCCAAGAAGAGGTTCAGGACTAAATTCTCTCAGCACCAGAAGGATAGGATGATGGAGTTTGCTGACAAGATTGATTGGAAGATCCAGAAACATAATGAGCAGGAGGTACAGCAGTTTTGTTCTCAAGTGGGTGTCAAGAGACAGGTTTTTAAGGTTTGGATGCACAATAACAAGCAAACAAGTAAGAAGCAGCAAATGAAGGTGTAG 984 0.4858 MAMRGQDKEIEIPTTTTTTLGYNLPNRDSSSSPSKLSSPTVGERSSSDHDQPPHQTHTLIFNEPPHQNLYPPPPPLAPRQPHRPTSDPDLSTPIAPTSNPSRTAPPQTTTTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTPESLRCAACECHRNFHRKEVEGELQPPPPPQPQHVPNYHHSYYPNKHNGHLYYPTPSSSSLHHRLVATTATPSLVPPVMMAFGGPAESSSEDLNMFQSNTGAQLSVQAPLSSKKRFRTKFSQHQKDRMMEFADKIDWKIQKHNEQEVQQFCSQVGVKRQVFKVWMHNNKQTSKKQQMKV 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01827 327 ProSiteProfiles 'Homeobox' domain profile. 259 323 IPR001356 GO:0003677
Pumo8g01827 327 FunFam Zinc-finger homeodomain protein 2 248 322 - -
Pumo8g01827 327 MobiDBLite consensus disorder prediction 66 82 - -
Pumo8g01827 327 SUPERFAMILY Homeodomain-like 253 322 IPR009057 -
Pumo8g01827 327 MobiDBLite consensus disorder prediction 10 63 - -
Pumo8g01827 327 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 118 167 IPR006456 -
Pumo8g01827 327 MobiDBLite consensus disorder prediction 1 117 - -
Pumo8g01827 327 MobiDBLite consensus disorder prediction 85 117 - -
Pumo8g01827 327 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 99 319 - -
Pumo8g01827 327 MobiDBLite consensus disorder prediction 168 189 - -
Pumo8g01827 327 Pfam ZF-HD protein dimerisation region 116 168 IPR006456 -
Pumo8g01827 327 Gene3D - 247 322 - -
Pumo8g01827 327 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 117 168 IPR006456 -
Pumo8g01827 327 NCBIfam homeobox domain, ZF-HD class 261 318 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01827 Pumo-Chr8 54492372 54494744 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01827 91 325 ZF-HD Transcription Factor Family AT2G18350 49.167 2.96e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo8g01827 ZF-HD_dimer 1.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01827 - - gmx:100776691 509.605