Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01822 ATGGCAATGAGAGGCCAAGATAAGGAAATAGAGATACCAACCACAACCACAACCACTTTAGGTTACAACCTTCCCAACCGAGATTCTTCTTCTTCCCCTTCCAAGCTCTCTTCTCCAACTGTTGGTGAAAGAAGTAGTAGTGATCATGATCAACCACCTCATCAAACTCACACATTAATCTTCAACGAACCACCTCACCATAATCTCTATCCTCCACCACCTCCTCCTCCTCTTGCACCGCGCCAACCTCATAGACCCACATCAGATCCAGATCTAAGCACCCCAATTGCTCCCACATCGAACCCCTCAAGAACAGCGCCGCCTCAAACAACAACAACCTCGACCCCATCGATCAGGTACCGAGAATGTCTTCGGAACCACGCGGCAAGCATGGGGAGCCACGTGGTGGATGGCTGTGGAGAGTTCATGGCAAGTGGAGAAGAAGGCACGCCGGAATCACTAAGATGCGCCGCATGTGAGTGCCACCGCAACTTCCACAGAAAAGAGGTTGAAGGAGAATTACAACCGCCACCACCACCACAACCACAACATGTTCCAAATTATCACCACAGCTACTACCCCAACAAGCACAACGGTCACCTTCACTACCCTACACCCTCTTCTTCTTCCCTCCATCATAGATTGGTTGCCACTACTGCTACACCAAGCTTGGTCCCCCCAGTGATGATGGCCTTTGGAGGCCCAGCTGAGTCCTCAAGTGAAGATCTCAACATGTTTCAGTCCAACACTGGAGCACAGTTGTCAGTGCAGGCACCACTTTCTTCCAAGAAGAGGTTCAGGACTAAATTCTCTCAGCACCAGAAGGATAGGATGATGGAGTTTGCTGACAAGATTGATTGGAAGATCCAGAAACATAATGAGCAGGAGGTACAGCAGTTTTGTTCTCAAGTGGGTGTCAAGAGACAGGTTTTTAAGGTTTGGATGCACAATAACAAGCAAACAAGTAAGAAGCAGCAAATGAAGGTGTAG 990 0.4879 MAMRGQDKEIEIPTTTTTTLGYNLPNRDSSSSPSKLSSPTVGERSSSDHDQPPHQTHTLIFNEPPHHNLYPPPPPPPLAPRQPHRPTSDPDLSTPIAPTSNPSRTAPPQTTTTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTPESLRCAACECHRNFHRKEVEGELQPPPPPQPQHVPNYHHSYYPNKHNGHLHYPTPSSSSLHHRLVATTATPSLVPPVMMAFGGPAESSSEDLNMFQSNTGAQLSVQAPLSSKKRFRTKFSQHQKDRMMEFADKIDWKIQKHNEQEVQQFCSQVGVKRQVFKVWMHNNKQTSKKQQMKV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01822 329 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 101 321 - -
Pumo8g01822 329 MobiDBLite consensus disorder prediction 87 119 - -
Pumo8g01822 329 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 120 169 IPR006456 -
Pumo8g01822 329 NCBIfam homeobox domain, ZF-HD class 263 320 IPR006455 -
Pumo8g01822 329 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 119 170 IPR006456 -
Pumo8g01822 329 Pfam ZF-HD protein dimerisation region 118 170 IPR006456 -
Pumo8g01822 329 MobiDBLite consensus disorder prediction 66 84 - -
Pumo8g01822 329 FunFam Zinc-finger homeodomain protein 2 250 324 - -
Pumo8g01822 329 ProSiteProfiles 'Homeobox' domain profile. 261 325 IPR001356 GO:0003677
Pumo8g01822 329 MobiDBLite consensus disorder prediction 10 62 - -
Pumo8g01822 329 MobiDBLite consensus disorder prediction 1 119 - -
Pumo8g01822 329 Gene3D - 249 324 - -
Pumo8g01822 329 SUPERFAMILY Homeodomain-like 255 324 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01822 Pumo-Chr8 54436316 54438680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01822 93 327 ZF-HD Transcription Factor Family AT2G18350 49.167 1.88e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo8g01822 ZF-HD_dimer 1.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01822 - - gmx:100776691 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01822 8 54436316 54438680 Pumo8g01822 8 54436316 54438680 ECH
Pumo4g02118 4 30244740 30246473 Pumo8g01822 8 54436316 54438680 ECH
Pumo8g01822 8 54436316 54438680 Pumo4g02118 4 30244740 30246473 PCT