Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01818 ATGAGAACTGATATTGGTGAAGGGGAGGAGTTACAAAATCCCCGCTCCTTTAAGGTGCATAGTAAAATCTGCATAGAACTCACAAAATTAGTGGATAGAATCTCAAGAATAGTTCCAGACATAGAGGCGGCACGGCCAGGATTCTCATCAGGAATAGAGTCTCTGTGTTTGCTGAACAATGCAATTGATAAAGCCAAACTACTTCTGCAACATTGCTCTGAATGCAGCAAACTCTACCTGGCTGTGACAGGGGATACAGTACTCTCAAGATGCCTAAAGGCAACAAGATCATTAGAGAAAAGCTTAATCCAAATTCAGGATATGGTTCCTGTTATGTTGGCTGTAGAGGTTTCTAGAATAATTCATGATCTTGAGTGTACGAGATTTGTTCTGGACCCTGATGAAGAAGAGGCTGGGAGGGTTGTGAGAGAGTTGCTTACTTTAACCTCAGATTCAGTTGATGATTCTGAAGTTAAAGCTCTTCAGTTTGCAGCATCTCGACTGAATATAACATCCCCAAAGGCCATCTTAATAGAACAACGATCCATTAAGAAGTTGCTAGATAAACTTGGACCAAATGACCTCACAAAGAAGAAGATATTGAGATATCTTCTGCATCTACTGAAAAAGCATGGAAAGCTCATGGTGGGAGAACATGTGGAGAGGGTCTATTCTCGTTCTGAGGAACAAGCTGCAACAGAGAACTCTAGTCACGATTCTCTACGAAGCCAACATGTTGAGGCAGACCCAAGCTTGAACTATGGTCAGTATAAAACTCACACCAGTGAGTTAAGTGGAGTTGCACCCCTTGAGGAATATAAGTGCCCAATATCCTTAAGGTTGATGTATGATCCTGTTATCATTGATTCAGGAGTAACATACGAAAGGATGTGGATAAAAAAGTGGTTTGATGAGGGTAATGACATATGCCCCAAAACCAGAAAGAAACTAGTCCATATGGAATTAACTCCAAACATGGCCGTGAAAGACTTAATATCAAATTGGTGCAGAAATAATGGAGTCTCCATTCCAGACCCTAGTAGGCAAGTAGAAGATATTCACGCATGGGAAGCTTCAAACACTTCCATTAACAGTATAGGAAGTTATTTCAATGATTTCAACTCGCCAGTGGATCTTAGTAACATGTCACTTGGATCATTGGATACTAGTTTTAGTTCAGATGCCTCACATGGTAAGAGCACTCGTGGCTCAAATTTGATGTTGACCAAGACCCGTGACAATTCTCACAAACATCAAGCACATACAGAGATACATGATACTGATTTGATGCTCTTGCCTCAACTATGTGATCTTCAATGGGATTCTCAATGCAAGGGCATTCAAGATTTGAAAGATCATTTGAAAAGCAATAGCCAAGCTTTTGTTTCTGTATCAGCAGAGAATTTCATTGAACCACTCGTCAAGTTTCTGAGCAATGCATATGATCTGCGTGATGTTAAAGCTCTGAGAGCTGGAACACAGCTTCTGTTGGAGTTTGTGAACAACTGCAGAGATGGTAAGACTAATTTGAATGAAGACACTTTCATTATGTTGGCAAGTTTTCTTGATTCAGAAGTGATAGGAGAAACTCTTACCATAATGGAAGAACTTTCGGGATATGGGTTTCGTAAAGCTAAAATTGCAGCATCCAGTGCTCTCAGTTCTATTTTAAACATACTTGATTCCGAAAACAAAGGTTTCCAACAACAAGCTATTAGGATAATGTACAATTTGTCCTTCAGTGGTGAAGTTTGCCCCCGCATGCTATCTCTCGGGTGCATCCCAAAATTGCTACCATTTTTTAAAGACAGGACCGTCTTGAGATACTGTATATATATATTGAAAAATGTTTGTGACACAGAAGAGGGTAGGAATTCTGTTGCTGAAACAAAGGGATGCATATCTTCTGTTGCTGAAATACTTGAGACAGGCAATAATGAGGAACAAGAACATGCACTGGCTGTTCTAGTCTCTTTATGCTCTCAACATGTGGATTATTGTAAGTTGGTAATGCGTGAGCATGAGGATATCACAACTCCTCTTTTCTATATCTCCCAGAATGGAAATGATAAAGGAAAGGAAAGTGCGTTGGAATTGTTCCATCTTTTGAAAGATGTTAACATTGTTGAGAATGAAGGTTGTCCTGAGCCAAATATCAACACCTCTTCTCGAGATTCTAACAGTCACCCTGAAGAAAATAAACCATCAAAGAGGTCCACGTTTCTGAAGAAACTATCACCCTTCTCAAAGTCCAGTTCACATGCATCAAAAACCAAAAGATGA 2283 0.3986 MRTDIGEGEELQNPRSFKVHSKICIELTKLVDRISRIVPDIEAARPGFSSGIESLCLLNNAIDKAKLLLQHCSECSKLYLAVTGDTVLSRCLKATRSLEKSLIQIQDMVPVMLAVEVSRIIHDLECTRFVLDPDEEEAGRVVRELLTLTSDSVDDSEVKALQFAASRLNITSPKAILIEQRSIKKLLDKLGPNDLTKKKILRYLLHLLKKHGKLMVGEHVERVYSRSEEQAATENSSHDSLRSQHVEADPSLNYGQYKTHTSELSGVAPLEEYKCPISLRLMYDPVIIDSGVTYERMWIKKWFDEGNDICPKTRKKLVHMELTPNMAVKDLISNWCRNNGVSIPDPSRQVEDIHAWEASNTSINSIGSYFNDFNSPVDLSNMSLGSLDTSFSSDASHGKSTRGSNLMLTKTRDNSHKHQAHTEIHDTDLMLLPQLCDLQWDSQCKGIQDLKDHLKSNSQAFVSVSAENFIEPLVKFLSNAYDLRDVKALRAGTQLLLEFVNNCRDGKTNLNEDTFIMLASFLDSEVIGETLTIMEELSGYGFRKAKIAASSALSSILNILDSENKGFQQQAIRIMYNLSFSGEVCPRMLSLGCIPKLLPFFKDRTVLRYCIYILKNVCDTEEGRNSVAETKGCISSVAEILETGNNEEQEHALAVLVSLCSQHVDYCKLVMREHEDITTPLFYISQNGNDKGKESALELFHLLKDVNIVENEGCPEPNINTSSRDSNSHPEENKPSKRSTFLKKLSPFSKSSSHASKTKR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01818 760 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Pumo8g01818 760 SUPERFAMILY RING/U-box 262 346 - -
Pumo8g01818 760 MobiDBLite consensus disorder prediction 713 760 - -
Pumo8g01818 760 Pfam Kinesin-associated protein (KAP) 486 653 - -
Pumo8g01818 760 SUPERFAMILY ARM repeat 431 703 IPR016024 -
Pumo8g01818 760 Gene3D - 430 715 IPR011989 -
Pumo8g01818 760 CDD RING-Ubox_PUB 271 322 IPR045210 -
Pumo8g01818 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 343 IPR013083 -
Pumo8g01818 760 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Pumo8g01818 760 PANTHER U BOX DOMAIN-CONTAINING 22 710 - -
Pumo8g01818 760 Pfam U-box domain 271 339 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01818 Pumo-Chr8 54379206 54385417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01818 1 707 U-box Gene Family AT4G36550 39.082 4.74e-150 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01818 - - gmx:100791627 1293.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01818 8 54379206 54385417 Pumo8g01818 8 54379206 54385417 ECH
Pumo4g02122 4 30305486 30309763 Pumo8g01818 8 54379206 54385417 ECH
Pumo8g01818 8 54379206 54385417 Pumo4g02122 4 30305486 30309763 PCT