Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01817 ATGTCGTTGAAAAGCATAGTAAGGGAACTGAAGGAGATGAGGGATGGGATTGGTAGCATGTCAAGGCGAGGTGTGGAGAGCAGGCGTTGGAACAGTCGGACAAAATCACATGTTGCTCCTGATATCACTCTAACTTTGCTCGAACCTATTCAGCAGGGGCAGTGGGCGAATTTACCGCCTGAATTGCTTCTGGACATAATAAGGAGGGTGGAAGAGAGTGAGACTACCTGGCCTGCACGTGCTGTTGTTGTTCATTGTGGTTCGGTTTGTAAATCGTGGAGGGCCGTTACGAAAGAGATTGTTAAGACTCCTGAACAATGTGGAAGGCTCACATTTCCTATTTCATTGAAGCAGCCTGGTCCTCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCAACATATCTATTGTACATTGGCCTGGTACCATCGGAGAACGAGACTGATAAGTTGTTATTAGCAGCCAAAAAGATAAGAAGGGCAACAGGCACAGACTTCGTCATATCTTTGGTTGCAGATGATTTTTCTCGCTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGACAGCCAACCCCCACAAGGAGGTGCAATTCAACCAGATAGTCGGTCTAGTAGGAGATTTCATTCTAAGCAGGTATCTCCTAGAGTTCCAGCATGTAACTATGTTGTTAGCACCATTGCCTATGAGTTGAATGTTCTCCGTGCAAGAGGGCCAAGGAGAATGCACTGCACCATGAACTCCATACCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATCATTGACGAGCCTTTTTCTCCCTCACCAGCACTGAAAGGAAAAGGTCCAATTAGAGATTTAGACAATGCAAGCCTCTCAGAGCTACCAGTACAGAGCCAAGGCTCAGCTGAGCCTCTTGTACTTAAAAATAAGGCTCCTAGATGGCATGAGCAACTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCTGCTGTTGATCCATCTCACTAA 1095 0.4548 MSLKSIVRELKEMRDGIGSMSRRGVESRRWNSRTKSHVAPDITLTLLEPIQQGQWANLPPELLLDIIRRVEESETTWPARAVVVHCGSVCKSWRAVTKEIVKTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTYLLYIGLVPSENETDKLLLAAKKIRRATGTDFVISLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPQGGAIQPDSRSSRRFHSKQVSPRVPACNYVVSTIAYELNVLRARGPRRMHCTMNSIPVSAVQEGGNAPTPTSFPQIIDEPFSPSPALKGKGPIRDLDNASLSELPVQSQGSAEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSH 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01817 364 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Pumo8g01817 364 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Pumo8g01817 364 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Pumo8g01817 364 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Pumo8g01817 364 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Pumo8g01817 364 Gene3D - 48 103 - -
Pumo8g01817 364 PANTHER TUBBY-RELATED 49 359 - -
Pumo8g01817 364 Pfam Tub family 116 358 IPR000007 -
Pumo8g01817 364 SUPERFAMILY Tubby C-terminal domain-like 104 362 IPR025659 -
Pumo8g01817 364 CDD F-box_AtTLP-like 55 99 - -
Pumo8g01817 364 Gene3D Tubby Protein; Chain A 115 364 IPR025659 -
Pumo8g01817 364 Pfam F-box domain 55 102 IPR001810 GO:0005515
Pumo8g01817 364 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Pumo8g01817 364 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Pumo8g01817 364 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01817 Pumo-Chr8 54374643 54377805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01817 1 363 TUB Transcription Factor Family AT2G18280 62.912 5.56e-155 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pumo8g01817 Tub 8.9e-80 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01817 K19600 - gmx:100798958 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01817 8 54374643 54377805 Pumo8g01817 8 54374643 54377805 ECH
Pumo4g02124 4 30316349 30319507 Pumo8g01817 8 54374643 54377805 ECH
Pumo8g01817 8 54374643 54377805 Pumo4g02124 4 30316349 30319507 PCT