Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01811 ATGAATGATTTGATGACAAAATCGTTTCTAAGTTATGTGGAACTAAAGAAGCAGGCTCAGAAGGACCTTGAAGACGATCTTGACATTGAAGCAGGGAAACTCAACCCCACGGAAGACCGCAACCTCTCTCAGTTCTTCCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTATTTGATCTTCAGCAACTGAATGAAGAGGCAAAGTGCACCCACAGTGCCAAAGTTCTCCGTGGCCTAAGGGACAGGATGGAGTCTGACATGGTTGCCGTGCTTCGCAAGGCACGGATTATCAAGGCAATGCTTGAGGTTCTTGACCAATCCAACATAGCCAATCGTAGTTTGTCAGAATCCTACAAAGAGGGGAGCCCCATTGATAGGACTAGAATGTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGACTTTCAGTCCTTGAGGGACAAGATTCTATCTGATCACAAGGAAGATTTGAAGAGAAGGTACTATAGCGCAACGGGTGAGGTTCCCACTGAGGAGGTTATGGAGAAGATGGTTTCAGGGAATCTCAAAGTGGAGTTTTTGGCTGGGAAAACGGATGCTGATTTGGGCACTCAGGTTAGGCATGAGGCAGTGATGGATATCCAGAGGAGTTTGGATAAGCTTCACCAGGTTTTTCTTGATATGGCTATTCTGGTTGAGACACAAGGAGAAAAGGTGGATAACATTGAGGATAATGTGGCTAATGCTGGTAACTTCATCCATGGTGGAACTAATAGTCTTTACTATGCCAACCAGATGAAGAAGAAGAACAGAAAATGGGTGTGTTGGGTTTTTGCTGTGGGGCTGATTATACTACTCGTATGCATCGTTGCAATGTTGTCTTCTTGA 897 0.4437 MNDLMTKSFLSYVELKKQAQKDLEDDLDIEAGKLNPTEDRNLSQFFQEVEAIKVEMEEITNLLFDLQQLNEEAKCTHSAKVLRGLRDRMESDMVAVLRKARIIKAMLEVLDQSNIANRSLSESYKEGSPIDRTRMSVTNGLRVKLRDMMNDFQSLRDKILSDHKEDLKRRYYSATGEVPTEEVMEKMVSGNLKVEFLAGKTDADLGTQVRHEAVMDIQRSLDKLHQVFLDMAILVETQGEKVDNIEDNVANAGNFIHGGTNSLYYANQMKKKNRKWVCWVFAVGLIILLVCIVAMLSS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01811 298 CDD SNARE_syntaxin1-like 208 263 - -
Pumo8g01811 298 Gene3D - 37 168 - -
Pumo8g01811 298 SMART SynN_4 37 164 IPR006011 GO:0016020
Pumo8g01811 298 SUPERFAMILY t-snare proteins 40 259 IPR010989 GO:0016020|GO:0016192
Pumo8g01811 298 Coils Coil 52 72 - -
Pumo8g01811 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Pumo8g01811 298 CDD SynN 42 192 IPR006011 GO:0016020
Pumo8g01811 298 SMART tSNARE_6 199 266 IPR000727 -
Pumo8g01811 298 FunFam Syntaxin 132 199 297 - -
Pumo8g01811 298 Pfam SNARE domain 240 290 IPR000727 -
Pumo8g01811 298 Gene3D - 201 297 - -
Pumo8g01811 298 PANTHER SYNTAXIN 39 287 IPR045242 -
Pumo8g01811 298 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 170 - -
Pumo8g01811 298 Pfam Syntaxin 44 239 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01811 Pumo-Chr8 54349678 54350666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01811 1 298 SNARE and Associated Proteins AT2G18260 60.261 6.07e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01811 K08486 - gmx:112997615 555.829