Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01790 ATGGAATGTCATAGAACTTGTGGGCAAGTGGTTGTGCCCGTGTTCTACCACGTTGATCCATCAGATGTACGCCATCAGAATGGTGCTTTCGGAGAGCCCTTGGAAGCGCTTGAATGTAAATGTGTACTTGAAGGGACGCTCGATGCGTTGTGGAGTTGGAAGAGTGCGCTCAAAGAGGCTGCAAGTTTGATCAGGTTGGGATCTCAGGAATTACAGGCATGGAGGAGGGTCATTGTACCTTACCTTTGCATATGCAAAGAGGCTGTTTCCAGATTCGAACCCACGATCAACTTGTCACCAAGGCATAACTTTATAGCTATTTCCATGATACTGAATAACCAACATTATTTCCATTACCTCTATTTCCATCCAAACAAACAAAGCATTAATTCCAATAGCTTTCTTGTCCCCATTCTAAATTTTAGCCGATATAGGACAAAACTGAGCGAAGGTGAGCTGGTGAAGGAAATTGTTCAGGACATTTTTGGAAAATTAGACATCGGATTATTGCCTATTACTGAATTCCTAGTTGGATTTGAATCTCGTGTGCAACAAGTGATTGAGTTTATCGAATGTCAATCAAGCACAGTTTGTGTTGTAGGGATACGGGGAATGGGTGGATCGGGTAAAACAACCACAGCCAAAGCCATCTACAATCAAATTCAACATAAATTCGTGGATAGAAGTTTCATTGAAAATATTAGAGAAGTTTGTGAAAAGGATAGTAGAGGACGTATTGATTTGCAAGAACAACTTCTTTCATATGTCCTGAAAACAAAGGTCAAGATACATAGTGTCACGATTGGGATAACTATGATCAAGCAAAGACTTTGTGGAAAAAGGGCTCTCATTGTACTTGATGATGTGAATGAGTTTGAGCAGTTAAAATCCCTATGTGGAAATCGTAAATGGATTGGTCGAGGAAGTGTAATCATCATTACAACCAGAGATGTATGCCTACTTAATGTATTTCAATTTGATCAGATGCTCCATATTTGTAGAATAAAGGAAATGGACCAAAATGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGAGAAGTAAGTCCAAGAGAGGACTTTATTGAACTCTCAAGGGACGTAGTTGCTTACTGTGGAGGACTACCACTAGCTCTTGAAGTCCTTGGGTCTTACTTATGTGAGGGGACCAAAGAACAAAGGGAAAGTGTATTGTCAAAACTAAAGAAAATTCACAATGATCAAGTGCAAGAGAAACTGAGAATAAGCTATGATGGTTTAGATTTTGAGGAAAAGAATATATTCCTTGACATATGTTTTTTCTTTATTGGCAAGGACAAAGCCAATGTTACAGAGATACTAAAAGGTTGTGGCCTTCACCCTGAAATTGGAATAACAATCCTGGTTGAAAGGAGCCTCATAAAGATTGAAAAGAATAACAAGCTCAAAACACATGATTTGCTACGTGACATGGGAAGAGAAGTTGTTCGTCATAGTTCTCCAGAGGAGCCTGAGAAGCGTAGTCGATTGTTAGTTCACCAGGAAGTACTTGATGTATTGACAGAACATACTGGAACAAAAGCAATCGAGGGCTTGGCTTTGAAGTTGCAAAGAACTAGTGGACTTCACTTTGATACTGAAGCATTTGAGAAAATGAAGAAATTGAGACTTTTGCAACTTGATCATGTACAACTTGTTGGAGATTACGAGTATCTGAACAAAAACTTAAGATGGGTCTGTTGGCAAAGATTTCCTTTAAAACACTTGCCAGACAACTTATACCAGGGAAATTTAATTTCCATTGAATTAAAATATAGTTATATTAGACTAGTATGGAAGGAGCCCCAGAGGTTAAAGATCCCCAATCTTAGTCATTCAAGGTACTTGAAGCACACCCCTGACTTTTCAAAACTACCAAATCTTGCAAAGCTCATTCTCAAAGATTGTCCAAGCTTGTCCGAGGTGCACCAATCCATTGGAGATCTAAGTAATCTTCTTGTTATAAATTTGATCGACTATACAAACCTTAGCAATCTTCCAAGGAGGGTCTATCAATTGAAATCTTTGGAAACTCTCAACCTTTCTGGTTGTTCAAAGATTGACAAGTTGGAACAAGATATAGTGCAAATGGAATCCTTGACTACACTGATTGCAAAAGACACAGCTATAAAAGAAATTCCTCATTCAATAGTACAATAA 2178 0.3861 MECHRTCGQVVVPVFYHVDPSDVRHQNGAFGEPLEALECKCVLEGTLDALWSWKSALKEAASLIRLGSQELQAWRRVIVPYLCICKEAVSRFEPTINLSPRHNFIAISMILNNQHYFHYLYFHPNKQSINSNSFLVPILNFSRYRTKLSEGELVKEIVQDIFGKLDIGLLPITEFLVGFESRVQQVIEFIECQSSTVCVVGIRGMGGSGKTTTAKAIYNQIQHKFVDRSFIENIREVCEKDSRGRIDLQEQLLSYVLKTKVKIHSVTIGITMIKQRLCGKRALIVLDDVNEFEQLKSLCGNRKWIGRGSVIIITTRDVCLLNVFQFDQMLHICRIKEMDQNESLELFSWHAFREVSPREDFIELSRDVVAYCGGLPLALEVLGSYLCEGTKEQRESVLSKLKKIHNDQVQEKLRISYDGLDFEEKNIFLDICFFFIGKDKANVTEILKGCGLHPEIGITILVERSLIKIEKNNKLKTHDLLRDMGREVVRHSSPEEPEKRSRLLVHQEVLDVLTEHTGTKAIEGLALKLQRTSGLHFDTEAFEKMKKLRLLQLDHVQLVGDYEYLNKNLRWVCWQRFPLKHLPDNLYQGNLISIELKYSYIRLVWKEPQRLKIPNLSHSRYLKHTPDFSKLPNLAKLILKDCPSLSEVHQSIGDLSNLLVINLIDYTNLSNLPRRVYQLKSLETLNLSGCSKIDKLEQDIVQMESLTTLIAKDTAIKEIPHSIVQ 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01790 725 SUPERFAMILY L domain-like 527 721 - -
Pumo8g01790 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 431 IPR027417 -
Pumo8g01790 725 Gene3D - 1 166 IPR035897 -
Pumo8g01790 725 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 707 IPR044974 GO:0006952
Pumo8g01790 725 Pfam TIR domain 1 65 IPR000157 GO:0007165
Pumo8g01790 725 ProSiteProfiles TIR domain profile. 1 81 IPR000157 GO:0007165
Pumo8g01790 725 SUPERFAMILY "Winged helix" DNA-binding domain 408 512 IPR036390 -
Pumo8g01790 725 Gene3D - 167 329 IPR027417 -
Pumo8g01790 725 PRINTS Disease resistance protein signature 276 290 - -
Pumo8g01790 725 PRINTS Disease resistance protein signature 199 214 - -
Pumo8g01790 725 PRINTS Disease resistance protein signature 677 693 - -
Pumo8g01790 725 PRINTS Disease resistance protein signature 372 386 - -
Pumo8g01790 725 Gene3D Ribonuclease Inhibitor 514 725 IPR032675 -
Pumo8g01790 725 Gene3D - 337 421 IPR042197 -
Pumo8g01790 725 Pfam NB-ARC domain 181 407 IPR002182 GO:0043531
Pumo8g01790 725 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 60 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01790 Pumo-Chr8 54063584 54067490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01790 146 723 WRKY Transcription Factor Family AT4G12020 32.667 9.80e-65 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01790 - - gmx:100809413 854.358