Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01780 ATGACGACGTTTCCTCTTACCATCGAGCTGGCGGCTTTGAGCTATGGAACCAGCAAGCAGCTACAACAGCAACAGCAACAGCAACAGCAACAACAACACCAGCTCATGGGCCAGCAGGGCCCTGCTCAACCGCGGCCTCTCTTTCACCAAGATCTCTACTCCGCCTTGGGAGTTGGGCCCAGCAGGCCCATCTCCGACGATCACTCCTCGTCGAGATCCGGCTTCATGCTTGGCCCAAGCGCAAGCGCTAGCGGAAGCGCAGGAGCAGGAGGGATTAGCTGTCAGGACTGCGGTAACCAAGCCAAAAAGGATTGCCCTCACATGCGGTGCAGAACGTGCTGCAAGAGCCGCGGCTTCGATTGCCAAACCCATGTCAAGAGCACTTGGGTCCCCGCTTCCAGACGCCGCGAAAGACAACAACAACTCACTGCGTTGCAGCAACAACAAAGCCTCGAACCTTCTGGAGACCTCCCCAAAAGGCACAGAGAGAGAGATCATAATAATAACCCCAACTCCTCTTCTGCTCTCGCCTGCACTCGCTTGCCTTCAAACCCCTCCTCCTCAGCAGGGTTAGAGGAGGTGAATTTCCCGGCTGTGGTGAGGTCTGCTGCGGAGTTCAGGTGCGTACGTGTGAGCTCCATGGACGAGGAGGCGGAGGAGGAGTACGCATATTCAACGGCTGTGAACATTGCAGGACATGTGTTCAAAGGAATTTTATATGACTATGGTTCAGAAGGTAACACTAATTACATGGCTGGTGTTGGGGAAAGCTCTTCCACCGGTGTTGGTGGCTTGAACCTCACTACTGGTGCCATTGTTTCTGAACCACTTGTTGATCCTTCTTCTTCCTTGTATCCGGCTCCGCTTAACTCCTTCATGCCTGGTAGCGGTACGCAATTCTTCCCTCACCCACGATCTTGA 921 0.5429 MTTFPLTIELAALSYGTSKQLQQQQQQQQQQQHQLMGQQGPAQPRPLFHQDLYSALGVGPSRPISDDHSSSRSGFMLGPSASASGSAGAGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQQQLTALQQQQSLEPSGDLPKRHRERDHNNNPNSSSALACTRLPSNPSSSAGLEEVNFPAVVRSAAEFRCVRVSSMDEEAEEEYAYSTAVNIAGHVFKGILYDYGSEGNTNYMAGVGESSSTGVGGLNLTTGAIVSEPLVDPSSSLYPAPLNSFMPGSGTQFFPHPRS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01780 306 MobiDBLite consensus disorder prediction 131 154 - -
Pumo8g01780 306 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 19 290 IPR007818 GO:0003700|GO:0006355
Pumo8g01780 306 Pfam Domain of unknown function (DUF702) 91 245 - -
Pumo8g01780 306 MobiDBLite consensus disorder prediction 22 39 - -
Pumo8g01780 306 MobiDBLite consensus disorder prediction 64 80 - -
Pumo8g01780 306 NCBIfam LRP1 C-terminal domain 196 243 IPR006511 -
Pumo8g01780 306 MobiDBLite consensus disorder prediction 22 89 - -
Pumo8g01780 306 NCBIfam putative zinc finger domain, LRP1 type 93 135 IPR006510 -
Pumo8g01780 306 MobiDBLite consensus disorder prediction 131 184 - -
Pumo8g01780 306 MobiDBLite consensus disorder prediction 169 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01780 Pumo-Chr8 53892891 53896231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01780 14 306 C2H2 Transcription Factor Family AT3G51060 46.061 1.01e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pumo8g01780 DUF702 3e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01780 - - gmx:100797973 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00737 10 9405828 9407110 Pumo8g01780 8 53892891 53896231 ECH
Pumo8g01780 8 53892891 53896231 Pumo8g01780 8 53892891 53896231 ECH