Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01767 ATGGGTCGTGGCAAAATTGAGATAAAGTTGATTGAAAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCCAAGGTTTCACTCATCATGTTCTCTAAAAACAACAAGATGCATGAATACATTAGCCCTGGCCTTACAACAAAAAAGATCATTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCCCACTATGAGAAAATGCTTGAAAACTTGAAGAAGCTGAAAGATATTAACAACAAACTCAGGAGACAGATCAGGCATAGGATAGGTGAGGGTTTGGATATGGACGACCTGAGCTTCCAGCAACTACGCACTCTTGAAGAGGATATGGTTTCTTCCATAGGGAAAATACGCGAACGAAAGTTCCACGTGATCAAAACTCGGACTGATACCTGTAGGAAAAAGGTTAAAAGCCTGGAGCAGATGAATGGAAATCTTCTGCTTGAACTTGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCCAACGGCGCCTCCACCCTGTATGCGTTCTGTCATCAGCACCATTCTCATCTGAATCTTCCCTCCCACCATGGAGATCAAGAACCCTTTAAAACTGATGACCTGCGCCTTGCTTGA 699 0.4406 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLDMDDLSFQQLRTLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGNLLLELEKCVIHPQFLLHDEGDEESAVALANGASTLYAFCHQHHSHLNLPSHHGDQEPFKTDDLRLA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01767 232 Coils Coil 85 105 - -
Pumo8g01767 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Pumo8g01767 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Pumo8g01767 232 MobiDBLite consensus disorder prediction 212 232 - -
Pumo8g01767 232 Gene3D - 14 104 IPR036879 GO:0003677|GO:0046983
Pumo8g01767 232 MobiDBLite consensus disorder prediction 213 232 - -
Pumo8g01767 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo8g01767 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo8g01767 232 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo8g01767 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo8g01767 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo8g01767 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo8g01767 232 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo8g01767 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo8g01767 232 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Pumo8g01767 232 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01767 Pumo-Chr8 53775717 53777782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01767 1 227 MADS-box Gene Family AT3G54340 50.218 2.21e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo8g01767 K-box 8.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01767 K09264 - gmx:100784496 429.483