Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01765 ATGCTTTACCAAACTCCCTATCGTCCACCTCAACCCTTTCAATTTCATCCCTTGCCTTCTTCCTCCACCCCTCTCCTTGCACTTCCAATCACACCACCTCTTTATCTCTTCTCTCAGGCCGAAACAGAAATGGAGTGCGTGGAGGCAGCGTTGAAGAGCAATTATAGGAAAGAAATGACTGTTAAACTCAGCCCACAAGCCTTCATGGAGGAGTTTAGTCTACAAAACGGAACAACCTGCGACGACTTTTCCGTCGACGACCTCCTTGACTTCTCCCACGTGGAAGAAGAACCCGAACAACAACAAAAAGACACTGCTTGTGTCTCCCTTCAACAACAAAACCCAACCCACGAACCCTCTACTTTCAAAGACGAATATGCCTCTTTGCCCACTAGCGACCTCACCGTTCCGGCGGATGACGTGGCGGACCTGGAGTGGCTGTCTCATTTCGTGGAGGATTCCTTCTCGGAATTCTCTGCGACCATCCCCACCGTAACGGAGAACCCAACAGGCCTTAAAGAGCCGGAGCCCGAACCGGAAAACCCGGTTTTCAGTTTCAAAACCCCGGTTCAGACCAAAGCGAGAAGCAAGCGAACCAGGAACGGTGTTCGGGTTTGGCCACTCGGTTCACCTTCCTTCACCGAGTCTTCCTCGAGCTCCACCACCTCTTCCTCTTCCTCCTCCTCCCCCTCTAACCCCTTGCTAATTTACACCAACTTCCCCCAAAGCCTCGACCACATTTCCTCCGAGCCCATACCCAAAAAAATTAAGAAAAAACCCTCTTCCGACAGTGGGGCCACCCTTGCGCCGCGACGCTGCAGCCATTGCGGCGTGCAGAAAACCCCTCAGTGGCGAACTGGGCCGCTGGGCCCAAAAACGCTCTGCAACGCGTGCGGGGTCCGCTTCAAGTCGGGCCGGCTCTTACCCGAATACAGGCCCGCTTGCAGCCCAACATTCTCAAGTGAATTACACTCCAACCATCATCGTAAAGTGCTCGAGATGCGCAGGAAGAAGGAGATAGTTTCTGGGGTTGAGCCTGGATTTGCTCCTGTTGTTCCCAGTTTTTGA 1068 0.5309 MLYQTPYRPPQPFQFHPLPSSSTPLLALPITPPLYLFSQAETEMECVEAALKSNYRKEMTVKLSPQAFMEEFSLQNGTTCDDFSVDDLLDFSHVEEEPEQQQKDTACVSLQQQNPTHEPSTFKDEYASLPTSDLTVPADDVADLEWLSHFVEDSFSEFSATIPTVTENPTGLKEPEPEPENPVFSFKTPVQTKARSKRTRNGVRVWPLGSPSFTESSSSSTTSSSSSSSPSNPLLIYTNFPQSLDHISSEPIPKKIKKKPSSDSGATLAPRRCSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIVSGVEPGFAPVVPSF 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01765 355 MobiDBLite consensus disorder prediction 96 124 - -
Pumo8g01765 355 FunFam GATA transcription factor 263 346 - -
Pumo8g01765 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 270 329 - -
Pumo8g01765 355 SMART GATA_3 267 321 IPR000679 GO:0006355|GO:0043565
Pumo8g01765 355 MobiDBLite consensus disorder prediction 210 232 - -
Pumo8g01765 355 Gene3D - 265 340 IPR013088 GO:0006355|GO:0008270
Pumo8g01765 355 Pfam GATA zinc finger 273 307 IPR000679 GO:0006355|GO:0043565
Pumo8g01765 355 MobiDBLite consensus disorder prediction 247 270 - -
Pumo8g01765 355 MobiDBLite consensus disorder prediction 103 124 - -
Pumo8g01765 355 PANTHER GATA TRANSCRIPTION FACTOR 74 339 - -
Pumo8g01765 355 ProSiteProfiles GATA-type zinc finger domain profile. 267 303 IPR000679 GO:0006355|GO:0043565
Pumo8g01765 355 ProSitePatterns GATA-type zinc finger domain. 273 298 IPR000679 GO:0006355|GO:0043565
Pumo8g01765 355 MobiDBLite consensus disorder prediction 165 232 - -
Pumo8g01765 355 CDD ZnF_GATA 272 320 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01765 Pumo-Chr8 53750872 53752993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01765 48 354 C2C2-Gata Transcription Factor Family AT5G66320 50.742 3.24e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo8g01765 GATA 1.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01765 - - gmx:100783966 521.931