Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01760 ATGGAGCAGCCGCTTCAACCGCAGCCGGAGACGGTGGCGAGCGGTGCTAGGGATTTGGAGGAGTCGCGACTGGTCGGAGTCCCCGTCGCGCTCGCTCGCGATGCTGACGTGGCGGCGGAGAGAGAGGGAAGTTGCTGCGTGCCGAATTTGCAGGTCACCGTCGTGGACGGTGCCGTTTTGAAACGGAAGCGCGGTCGGCCGGCCAAGGGAGCACCGAAAGTGGAGCCTCCGGTTAGGCAGAAAAAAGACGAGGAGGACGTCTGTTTCATTTGCTTCGACGGCGGGAGCCTCGTTCTCTGCGATCGCCGGGGTTGTCCAAAAGCGTATCATCCCGCGTGTATTAAGCGAGACGATGAGTTTTTTCGATCAAAGGCCAAGTGGAATTGCGGTTGGCACATATGTAGCGTTTGTCAGAAGTCGTCACATTATATGTGCTATACTTGCGCGTACTCTTTGTGTAAGGGATGCACAAAAGATGCTGATTTTGTTTGTGTCAGAGAGAATAAAGGTTTATGCGGAATATGCATGAGGACTATAATGATGATTGAGAACAGTGCCCAGGGAAATAAGGAAAAGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGTTGTATTGGATGTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTCCTTCAAGCTAAAAACCCATGGAAAGGTGCTGCTCCTATGAGTTATAAGGTTCAAAGTCCCCATGAACTTTATCATCTTAGGGATGACAAAGGTTCTGGTTCTGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAGAACAAGAAGCCCAAGAGACAGCCAAAGCTTCTTGGTAACGGTGATTGCTTGGATAGGATAACTTCAGGTGGTGACAGTGGTGTGTCTTTGCCTGAATGCACAAAATGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAGTATGCAAAAAAAAATAATCTTCGTGATCCTCAACAGCAGTCCCAAATTGTTTGCGACTCTAGACTATTAAATTTGTTTGGAAAAGCACGTGTTGGCCACATTGAAATGCTAGAGCTCCTTGAACCCCACTTTCTTTTAAAAGACAATGGCCCTGCAGAAAATACTTTTGGAGTGGGAATTATTAATGCTGTTGCTAGTGAAGGGGAGGCCATTAACAATAAACAGTTGATGTTAGTTGATGACAAGAGATGTAAGACACATAATCCAGATGCATATGCTGCAATAGATGTTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTGATGGAGAATCTAACTGAAGATATTGAAAAGATTCATGAGAAGGTTGTTGGTTCATTTGTGCGGATAAGAATCTCTAGCAGTGATCAAAAACATGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCCGAACCTTACAAAATTGGCACAAGAACAACTGATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGTCATATCCATTGCTGAAATTTCTAATCAGGAGTTCTCTGAGGATGAATGCAAGCGGCTGCGTCAGAGTATAAAATATGGGCTCTCAAAGAGATTGACTGTGGGAGAGATTCTAAACAAAGCAGTGACACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATATTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAGCTTAAAGAATATGTGGAGAAATTGCAGCTACTAAACTCTCCAGAGGAACGTCAACGCAGGCTGCATGAAATTCCAGATGTACACTCTGACCCCAATTTGGATTCAATGTTTGAGTCTGATGAAGATGATGGAGAGTCAGATGAAAGGAAGCAAGATAGCAATATATTTTCAAAATATCTTGGGTTTGATAGAAAAGAGAGGGGCTCTATTTTTCCAAGAATTTCAAATGGTGTCTCCAACGACACGGGAGGCAAGACACAAGACTTGCCTGCTACCCAAGAACCGGTTGGAAATATATGCACAGTGAAGAATAATATCAACTGTGTTGATACAGTTATTGATGATAGCACTGATGCAGTTGTGAAATCAGAAGTGTCTAGTGTTGCAGTGGACGTTTCATCATCGCTTCTCTCTACTGGGATGCAGCAGTCATTTAATGATTTTTTGAATGATAGATCATGGCATTATCAGGATCCAACTGGGAAGATTCAAGGACCTTTTTCTATGTTGCAGCTGTACAAGTGGAATGCAAGTGGATGTTTCCCTCCAGATCTCAGAATATGGAGGGTAGGTGAGAAACAAGATAACTCTATACTGTTAACCGATGCACTAAGTGGGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAGCCAATTGCTCTCTCTAGGCGTCAGTGTTACATTGGATAATAAAGATAAAAGTCAGGATGCTGGGAAGAATGCAAAGAATGAAATTTCTGCAGATGGCCAAATTATTGAACAGAGCAAGGAACAAAAGCCACAGGTGGATAATACCTCTACCCAGTCTGATGGCAAAGATGAACCTGTTAGGAGCAATGGATGGCATGGCCAGCTGCATGTATGCCCTTCACTACTGTCAACTGCCATTCCTGAGAAATTGAATGAGAATCCTTCTGATAAATTAAGGAAAGGTCATGGCATTGTGGGAAACTCCGAAGATAATGGAAATAATGGCTCGAACAGGACATCTGATGGGCAGAGTAATAGTGGGCAGAGTTATCAGAAGCAATCAGATAGTGAAGAGAATTCAGGGCAATCTTCTGGACAGACCTGGAGACACCCTAATGTAAATAGTTCTTCCAATTGCTTGGTTACCACGTCAGCTCATGTTTCTGGTACAAAAACATCACCGCATAAGCTGGGATTTGATTTGCATAATTCTCCTTCCCCTCCAGCATGTAATACATCTTCTGGACAGACCTGGGGTCACCCTAATGTAAATAGTTCTTCCAATTGCTTGGTTAACACATCAGACCATGTTTCTGCTACAAAAACATCACCGCAAAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCTTCTAATGCATCTTCTGGACAGACCTGGAGACACCCTGATATAAATAGTTCTTCCAATTGCTTAGTTACCACATCAACTCATGTTTCTGCTACAAAAACATCACCGCATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCATGTAATACAACATGGCAGGCAATCATTGGTGAGCCCAATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTTTGGTGGCATGGAATCTCCCACTTCAATCATGAAATGTGGTGAGGATTTGACTGAAGGTTCTAAAAATGATTGTCTCAGTTTTGTTGCAGAGCTTAGCCCAATGCTTGATGCGGGTAAAGGTGATGCACTGAGCTCCACTGGTGATTTAAACTTACCATCTCAACCAACAGCAGCAGAGGAACCATTACGGCAAGCAGATGTACATCAGCATCATCATCAAAGAATTTCTGCGGAGCATTCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAGAACGTTAGTGTTTCAGGTAATCAATGGGATTCAGGCTCAGAAAATTCAACCATTGTTCCATCCCCTGGAACCTTGGGCCTGGCTATTGACACCACTTGGAGACTCGGGTTAGAGAATACACACTTGGGATGGAGTGGAATAGATCAAGGAAATGCAAATGTGGGTTGGGGAGTAGGACAGACGGCAGTGCAGGAAAACAGGAGTTCAAGTTCATACACTTCTGTAGTAACACCAGGCTTAGGGGATAGCCAAACAAGATATGGCAGCGATCGATTTTCTGTGTCCAGAGATCGGGGTTTTCAAGGTCATGGTAGGGAATCAGGTTTTGGTAGAAGCAGAACTCCATATAACAGGCAACCGTCATATGGTGTTGGGAATGGAGGATCATATAGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAGGGAGCATCCTGTGATTACTGGCACCCATGA 4122 0.4333 MEQPLQPQPETVASGARDLEESRLVGVPVALARDADVAAEREGSCCVPNLQVTVVDGAVLKRKRGRPAKGAPKVEPPVRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDDEFFRSKAKWNCGWHICSVCQKSSHYMCYTCAYSLCKGCTKDADFVCVRENKGLCGICMRTIMMIENSAQGNKEKCEVDFDDKSSWEYLFKLYWMYLKGKLSLTFDELLQAKNPWKGAAPMSYKVQSPHELYHLRDDKGSGSENSCIDIESNNLKNKKPKRQPKLLGNGDCLDRITSGGDSGVSLPECTKWASKELLEFVAHMKNGDTSLLSQFDVQTLLLEYAKKNNLRDPQQQSQIVCDSRLLNLFGKARVGHIEMLELLEPHFLLKDNGPAENTFGVGIINAVASEGEAINNKQLMLVDDKRCKTHNPDAYAAIDVHNINLIYLRRSLMENLTEDIEKIHEKVVGSFVRIRISSSDQKHDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVISIAEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKAVTLQAIRVNDLLEAEILRLNHLRDRASEKGHRKELKEYVEKLQLLNSPEERQRRLHEIPDVHSDPNLDSMFESDEDDGESDERKQDSNIFSKYLGFDRKERGSIFPRISNGVSNDTGGKTQDLPATQEPVGNICTVKNNINCVDTVIDDSTDAVVKSEVSSVAVDVSSSLLSTGMQQSFNDFLNDRSWHYQDPTGKIQGPFSMLQLYKWNASGCFPPDLRIWRVGEKQDNSILLTDALSGKCSKNVSLPFNSQLLSLGVSVTLDNKDKSQDAGKNAKNEISADGQIIEQSKEQKPQVDNTSTQSDGKDEPVRSNGWHGQLHVCPSLLSTAIPEKLNENPSDKLRKGHGIVGNSEDNGNNGSNRTSDGQSNSGQSYQKQSDSEENSGQSSGQTWRHPNVNSSSNCLVTTSAHVSGTKTSPHKLGFDLHNSPSPPACNTSSGQTWGHPNVNSSSNCLVNTSDHVSATKTSPQKLGFDLHNPPSPPASNASSGQTWRHPDINSSSNCLVTTSTHVSATKTSPHKLGFDLHNPPSPPACNTTWQAIIGEPNDFDESVSDLLAEVEAMEFGGMESPTSIMKCGEDLTEGSKNDCLSFVAELSPMLDAGKGDALSSTGDLNLPSQPTAAEEPLRQADVHQHHHQRISAEHSSRSSKVEVGTKNVSVSGNQWDSGSENSTIVPSPGTLGLAIDTTWRLGLENTHLGWSGIDQGNANVGWGVGQTAVQENRSSSSYTSVVTPGLGDSQTRYGSDRFSVSRDRGFQGHGRESGFGRSRTPYNRQPSYGVGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYWHP 1373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01760 1373 SMART swib_2 305 388 IPR019835 -
Pumo8g01760 1373 MobiDBLite consensus disorder prediction 1283 1343 - -
Pumo8g01760 1373 Gene3D - 745 801 IPR035445 -
Pumo8g01760 1373 MobiDBLite consensus disorder prediction 608 627 - -
Pumo8g01760 1373 Pfam Plus-3 domain 438 541 IPR004343 GO:0003677
Pumo8g01760 1373 SMART rtf1 433 543 IPR004343 GO:0003677
Pumo8g01760 1373 SUPERFAMILY FYVE/PHD zinc finger 66 132 IPR011011 -
Pumo8g01760 1373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 176 IPR013083 -
Pumo8g01760 1373 ProSiteProfiles Plus3 domain profile. 433 566 IPR004343 GO:0003677
Pumo8g01760 1373 MobiDBLite consensus disorder prediction 1283 1304 - -
Pumo8g01760 1373 Pfam GYF domain 746 788 IPR003169 GO:0005515
Pumo8g01760 1373 ProSiteProfiles SWIB/MDM2 domain profile. 302 385 IPR003121 -
Pumo8g01760 1373 MobiDBLite consensus disorder prediction 823 876 - -
Pumo8g01760 1373 CDD SWIB-MDM2_like 308 383 - -
Pumo8g01760 1373 MobiDBLite consensus disorder prediction 1031 1051 - -
Pumo8g01760 1373 MobiDBLite consensus disorder prediction 608 643 - -
Pumo8g01760 1373 MobiDBLite consensus disorder prediction 910 974 - -
Pumo8g01760 1373 CDD GYF 743 798 IPR003169 GO:0005515
Pumo8g01760 1373 MobiDBLite consensus disorder prediction 840 867 - -
Pumo8g01760 1373 MobiDBLite consensus disorder prediction 988 1002 - -
Pumo8g01760 1373 ProSitePatterns Zinc finger PHD-type signature. 88 148 IPR019786 -
Pumo8g01760 1373 SUPERFAMILY GYF domain 740 796 IPR035445 -
Pumo8g01760 1373 SUPERFAMILY CCCH zinc finger 1348 1372 IPR036855 GO:0046872
Pumo8g01760 1373 FunFam Zinc finger CCCH domain-containing protein 19 434 563 - -
Pumo8g01760 1373 ProSiteProfiles Zinc finger PHD-type profile. 85 151 IPR019787 -
Pumo8g01760 1373 MobiDBLite consensus disorder prediction 1162 1212 - -
Pumo8g01760 1373 CDD PHD5_NSD 87 132 - -
Pumo8g01760 1373 SUPERFAMILY SWIB/MDM2 domain 307 384 IPR036885 -
Pumo8g01760 1373 SMART PHD_3 87 133 IPR001965 -
Pumo8g01760 1373 ProSiteProfiles Zinc finger C3H1-type profile. 1348 1373 IPR000571 GO:0046872
Pumo8g01760 1373 MobiDBLite consensus disorder prediction 894 1002 - -
Pumo8g01760 1373 ProSiteProfiles GYF domain profile. 743 797 IPR003169 GO:0005515
Pumo8g01760 1373 SMART gyf_5 744 799 IPR003169 GO:0005515
Pumo8g01760 1373 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 48 1373 - -
Pumo8g01760 1373 FunFam Zinc finger CCCH domain-containing protein 19 77 177 - -
Pumo8g01760 1373 Gene3D SWIB/MDM2 domain 301 390 IPR036885 -
Pumo8g01760 1373 MobiDBLite consensus disorder prediction 1186 1208 - -
Pumo8g01760 1373 SUPERFAMILY Plus3-like 434 562 IPR036128 GO:0003677
Pumo8g01760 1373 Gene3D - 434 563 IPR036128 GO:0003677
Pumo8g01760 1373 Coils Coil 567 587 - -
Pumo8g01760 1373 Pfam SWIB/MDM2 domain 310 383 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01760 Pumo-Chr8 53689227 53695515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01760 85 165 PHD Transcription Factor Family AT4G14920 34.568 1.89e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pumo8g01760 Plus-3 8.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01760 - - gmx:100801151 2555.01