Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01747 ATGATGGAGTCGATGGAGTCATGTGTCCCACCGGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTATTATCTCAGGAAGAAAGTGGCTTCTCAAAAAATCGACCTTGATGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAAAAGTATCCAACAGGGACAAGAACTAATAGAGCCACCATGGCTGGGTTTTGGAAGGCGACAGGAAGAGACAAAGCAGTGTATGAAAGGGCAAAACTTATTGGGATGAGGAAGACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAACTGATTGGATCATGCATGAGTATAGGCTTGAATCCGATGAGAATGGACCACCACAGGAGGAAGGATGGGTTGTGTGCAGAGCCTTCAAGAAAAAAACCACTGGGCAAACGAAGACTATTAATATTGAAGGATGGGACTCAAGCTACTTCTATGATGAAGCAAGTGGGGCAAGCACTGTGGTAGATCCAATTGATCTCATTTCAAGACAGTCTCAGAGCTTTTTAGCTCAAAATTTCATGTGTAAGCAAGAGATAGAAGCAGAAAACTTGAGTTGCATGCATCAAGACCCGTTTGTACAACTTCCTCAGCTAGAAAGCCCGTCTTTGCCGTTAGTAAAGAGGCAAAGCACAGTGTCACTAGTATCAGACAATAACGAAGATGAAGACATTCAAAACAGGTTATCCAACAACAACAACACAAAGAAAGTGACTACTGATTGGAGAGCCCTTGACAAGTTTGTAGCCTCTCAACTGAGTCAAGAAGACACGCATGAAACTAATGGAGTACTCTCAAGCTTTGAACCCCATGATAACCACGACATGGCACTGCTGCTACTGCAGAGTAGTAGGGATGAAGGGAACAGGTTAAGCCCGTTTCTAAATACAAGCTCAGACTGTGATATTGGGATATGCGTATTTGAAAAATGA 1029 0.4325 MMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYERAKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTGQTKTINIEGWDSSYFYDEASGASTVVDPIDLISRQSQSFLAQNFMCKQEIEAENLSCMHQDPFVQLPQLESPSLPLVKRQSTVSLVSDNNEDEDIQNRLSNNNNTKKVTTDWRALDKFVASQLSQEDTHETNGVLSSFEPHDNHDMALLLLQSSRDEGNRLSPFLNTSSDCDIGICVFEK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01747 342 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Pumo8g01747 342 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Pumo8g01747 342 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 256 - -
Pumo8g01747 342 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Pumo8g01747 342 FunFam NAC domain-containing protein 18 162 - -
Pumo8g01747 342 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01747 Pumo-Chr8 53566935 53571888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01747 2 341 NAC Transcription Factor Family AT2G18060 64.960 1.30e-163 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo8g01747 NAM 4.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01747 - - gmx:100778767 664.84