Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01746 ATGATTAAGGAGGCTTTGATCGCTCTGAACGAGAAAGGAGGTTCGAGTCCTTATGCGATAGCGAAGTACATGGAGGAGAAGCACAAGGCGGTGCTCCCTGCGAATTTCAAGAAGATTCTTGGTCTTCAACTGAAGAACCAAGCCGCGAGAGGGAAACTCGTGAAGATCAAGGCTTCGTACAAGTTATCCGAAGCCGCGAAGAAGGAGAAGAAGGAGAGCGCGGCCAAGGCCAACACAGAGAAGAAGGAATCGCGTCCGAAACGAAGCACCGCCGCTGCTCCGAAGAAAACCGAGGCGGTTAAAAAGACTGCAAAGGCAGGGAAGAAGGCTGGGCCTAAGAAGACGAAGAAAGTGTCGACGCCTGCGAAGCCCAAACAGCCCAAGTCCATTAGGTCTCCGGCCAAGAGGGCCCGGAAAGCTGCCGTTGCTGCGACTTGA 438 0.5365 MIKEALIALNEKGGSSPYAIAKYMEEKHKAVLPANFKKILGLQLKNQAARGKLVKIKASYKLSEAAKKEKKESAAKANTEKKESRPKRSTAAAPKKTEAVKKTAKAGKKAGPKKTKKVSTPAKPKQPKSIRSPAKRARKAAVAAT 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01746 145 Gene3D - 1 77 IPR036388 -
Pumo8g01746 145 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 1 64 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo8g01746 145 PANTHER HISTONE H1 1 138 - -
Pumo8g01746 145 MobiDBLite consensus disorder prediction 64 145 - -
Pumo8g01746 145 CDD H15 1 62 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo8g01746 145 SUPERFAMILY "Winged helix" DNA-binding domain 1 75 IPR036390 -
Pumo8g01746 145 MobiDBLite consensus disorder prediction 106 121 - -
Pumo8g01746 145 PRINTS Histone H5 signature 83 97 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pumo8g01746 145 PRINTS Histone H5 signature 116 133 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pumo8g01746 145 PRINTS Histone H5 signature 8 25 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pumo8g01746 145 SMART h15plus2 1 59 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo8g01746 145 MobiDBLite consensus disorder prediction 64 105 - -
Pumo8g01746 145 Pfam linker histone H1 and H5 family 1 61 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01746 Pumo-Chr8 53558750 53559861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01746 1 62 Single Myb Histone (SMH) Gene Family AT1G49950 38.710 4.54e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01746 K11275 - gmx:100500169 173.711