LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo8g01717	ATGGCAGAAAACAAAGACGAAATCTATTCTGAATGTTCACCAGGCTCAACCTCGCCAATGGGTAGCAAGTGCAGATACTTGTTTAATAGATTATGCAGTTGTGCCACTTCATGGAACCAAAGCACCACACTAAAAGGTCGAAGAATTTTCCACAGAGATGTGGAAAAAGAAGAATTCCAGTATGCAAGTAGTCACTGTCTCTCATCCTACTATAGTGTCTTTATGGTTCGACTTGCAATCATGGTTATGCTAGCCATCTTGATAGGGTTGCTCACTATACTGACATGGCATTTCACCAAGATTTATACAGCAAAATCACTTAATAGTTTGGCATATGGTTTGCGTTATGAACTTCTGCAACGCCCCGTTTTGAGGATGTGGAATATTTTAAACTCTACTTCTGAAATTACTACAGCTCAGGTCAAACTGTCTCAGTATGTGATCAGACGTCACAGCAACCCTGCGACTCAAGCAGAGCAAATTGAGCTGTATGAAGCGATGAGGGCTGTAACATGGGCGTTATTTGCTAGTCGGAAAGCTCTAAACTCTATAACTATCAACTATAGGAACGGATTTGTTCAAGCATTCCACAGAGATCTGAAGGACAACAACACATTTTACATCTATTCTGATCTTTCAAATTACTCCATGGGTGCTAGCAACTCTAATGAGGTCAATTCCATTTCAACACATCGAGCTTGGGATGATAAAGGCCTTCGTGGTAACTATTCTGCAATCTGGTACCGTGAGCCACTTGACCCTGTGAGTGGTGAAAAGATTGGAAAAGCTATGAAAATTGCACCTGAAGACTTGATCAACATAGCTGGTCTTTCTCAAGTACCTGATGGTGTAGCCTCGTGGCACGTCGCGGTGAGCAAGTTCACAGATTCACCACTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATAAGACTATTATGGCAGTTGTGGGGGTCACAACTGCACTTTATAGTGTAGGACAGCTAATGAGAGAGCTTGTTGAGATGCACAGTGGTCATATGTATTTGACATCTCAAGAGGGTTATTTACTTGCAACTTCCACTAGTGCACCTCTACTGGCAACTTCAACAAAGCCTCCTAAGCTTAAGATGGCTGTTGACTGTGAAGACGATGTAATTAGACTGGGAGCTGAGTGGTTACAGAGAACTTATGGGAACAATTATCCTCCAAGTCATGAGATTCATGTAGAGAATGTCAAGCTAGGCCACCAGAGATATTACGTTGACTCATTCTTCCTAAAATTGAAGAGACTTCCTTTGGTCGGTGTGATCATCATACCAAGAAAGTATATCATGGGGCAGGTAGATGAAAGAGCCTTCAAAACGACACCTATGGCAGCAGTAATTGGGTTGCTTGACATTCTTATATCTGATGACTGTCTCACAAATGAACAATACTCAACTGTTACTCAAATCAGAAAATGCTCAACTGCTCTGCTCCGTCTTCTTAATAACATCTTGGATCTGAGTAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTGGGAAGGGAACTTGAAGGACTTGTAGATATGTTTTCCGTTCAGCGCATTAACCACAATGTTGAGACTGTTTTAGACCTGTCAGATGATATGCCAAAGGTAGTTCGGGGTGATTCTGCAAGGGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTTACTCCATCGGGTCATATTATTCTGCGAGGATGGTCTGAAAACCCAAATTCTTCCGTTGGAAGTCCAAATTGTCCTCTTGACCAGAAGAAATCACGGGGTTTACAAAAGTGCAGAGAGAAGCCAAATGCAAACCATGCAAAGAGAACATCTATAAAAGATAACAAAGTGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACACGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTGAGAAACTTGGTTAACAAGATGGGTGGAGACATCAGGGTTGTCAAAAAGGATGGCCCAGGAACGCTGATGCGATTATGCTTGCTTCTCAGTGCGCCAATGGATGTCACAGAACAACAGTGTGCAGTAGATTTGACAGACAATGGCTTAGTGGTACTGCTTGCACTGCATGGAAACATGGGTCGATTAATTACATCCAAGTGGCTACAGAAAAACGGGGTGTGCACAATGGAAGCATCTGACTGGAACGGACTAACTCAAATTTTGAGGGAACTCTTTTATGCAAGAAGTTCAGTCCATAATACTGACTTTGATGCACACTATCCAGCAAAAGAGGAATTGAAGTCTAAACTACTCAACATACGAGATATGAGAAACCCAGTTTTTGTCATTGTTGTTGACATTGGACTACTTGACTTGAGCACAGATATATGGAAGGAACAACTTAACTTCCTTCACAGGTACTTTGGTAGAGCAAGGTTTGTATGGATGCTAAATCATGACACTTCCAATAACATAAAGATGGAGCTCCGTAGGAAAGGGCATATACTTATGGTCAACAAACCCCTTTACAAAGCAAAAATGATTCATATCTTGGAAGCTGTCATAAAAGAGAGAAATCTTGAGCTGACAAAGGAAAAACATGACTGCTCCAAGGACCACAATGAAAGAGGGTGA	2688	0.4174	MAENKDEIYSECSPGSTSPMGSKCRYLFNRLCSCATSWNQSTTLKGRRIFHRDVEKEEFQYASSHCLSSYYSVFMVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLNSLAYGLRYELLQRPVLRMWNILNSTSEITTAQVKLSQYVIRRHSNPATQAEQIELYEAMRAVTWALFASRKALNSITINYRNGFVQAFHRDLKDNNTFYIYSDLSNYSMGASNSNEVNSISTHRAWDDKGLRGNYSAIWYREPLDPVSGEKIGKAMKIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKTIMAVVGVTTALYSVGQLMRELVEMHSGHMYLTSQEGYLLATSTSAPLLATSTKPPKLKMAVDCEDDVIRLGAEWLQRTYGNNYPPSHEIHVENVKLGHQRYYVDSFFLKLKRLPLVGVIIIPRKYIMGQVDERAFKTTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQRINHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPSGHIILRGWSENPNSSVGSPNCPLDQKKSRGLQKCREKPNANHAKRTSIKDNKVILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGDIRVVKKDGPGTLMRLCLLLSAPMDVTEQQCAVDLTDNGLVVLLALHGNMGRLITSKWLQKNGVCTMEASDWNGLTQILRELFYARSSVHNTDFDAHYPAKEELKSKLLNIRDMRNPVFVIVVDIGLLDLSTDIWKEQLNFLHRYFGRARFVWMLNHDTSNNIKMELRRKGHILMVNKPLYKAKMIHILEAVIKERNLELTKEKHDCSKDHNERG	895

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo8g01717	895	SUPERFAMILY	Homodimeric domain of signal transducing histidine kinase	451	504	IPR036097	GO:0000155\|GO:0007165
	Pumo8g01717	895	Gene3D	-	505	703	IPR036890	-
	Pumo8g01717	895	ProSiteProfiles	Histidine kinase domain profile.	451	702	IPR005467	-
	Pumo8g01717	895	PANTHER	TWO-COMPONENT HISTIDINE KINASE	451	707	-	-
	Pumo8g01717	895	CDD	HisKA	451	499	IPR003661	GO:0000155\|GO:0007165
	Pumo8g01717	895	SMART	HKATPase_4	550	702	IPR003594	-
	Pumo8g01717	895	SUPERFAMILY	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	492	698	IPR036890	-
	Pumo8g01717	895	SMART	HisKA_10	444	503	IPR003661	GO:0000155\|GO:0007165
	Pumo8g01717	895	Pfam	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	550	700	IPR003594	-
	Pumo8g01717	895	PRINTS	Bacterial sensor protein C-terminal signature	645	655	IPR004358	GO:0016310\|GO:0016772
	Pumo8g01717	895	PRINTS	Bacterial sensor protein C-terminal signature	662	680	IPR004358	GO:0016310\|GO:0016772
	Pumo8g01717	895	PRINTS	Bacterial sensor protein C-terminal signature	627	641	IPR004358	GO:0016310\|GO:0016772
	Pumo8g01717	895	Gene3D	-	450	504	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo8g01717	Pumo-Chr8	53113850	53120048	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo8g01717	18	887	Histidine Kinase Gene Family	AT2G17820	57.817	0.0	1081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo8g01717	-		-	pop:18101097	1105.12