Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01699 ATGACTCTCAAAGGCTTGGTATCACTTGTAATCAATTTAATTGGCCTGGCTGAGGGACAAAGGAACTATGATGCCCCTTTACCTTCTTACATGCTATCCAGCCATATACAAATTAACAAGCAACAACAATCATCTGAATCTGCATCAGCATCAGCATCATCCAATTTTAATGAGGATAGTTGGTGTTGTGTGTGCTTGTCAAGGTTAAAAGCCAAAGATGAAATCCGTGTCCTTCCTTGCTCGCACAAATTTCATAAGATTTGTGTAAATAGATGGCTTAAGGGTCACCACAAAACGTGTCCACTCTGCCGTTTCTCAATGGGAGCCGAGGAGAAGTCTCATCGAGCTGAAATGTTCACTGAAGAGATGTTAATATGGTTTTCTTCTTTCCATGTAGCTGGTATGTAA 408 0.4069 MTLKGLVSLVINLIGLAEGQRNYDAPLPSYMLSSHIQINKQQQSSESASASASSNFNEDSWCCVCLSRLKAKDEIRVLPCSHKFHKICVNRWLKGHHKTCPLCRFSMGAEEKSHRAEMFTEEMLIWFSSFHVAGM 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01699 135 CDD RING-H2_PA-TM-RING 62 104 - -
Pumo8g01699 135 SUPERFAMILY RING/U-box 55 108 - -
Pumo8g01699 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 109 IPR013083 -
Pumo8g01699 135 ProSiteProfiles Zinc finger RING-type profile. 62 104 IPR001841 -
Pumo8g01699 135 PANTHER TARGET OF ERK KINASE MPK-1 33 112 - -
Pumo8g01699 135 Pfam Ring finger domain 62 104 IPR001841 -
Pumo8g01699 135 SMART ring_2 62 103 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01699 Pumo-Chr8 52999171 52999578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01699 58 108 C3H Transcription Factor Family AT1G80400 50.980 2.00e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01699 - - gmx:100809233 241.891