Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01681 ATGGCCGATTCTCCACCGAGAAGGAATTCAAGGTCCCCTTCCCCATGGAGGGCTCAGTCAAGGTCCAGGTCCAGGTCTAGATCCAGGCCTAGGTCTAGGTCCCGGTCAAGATCTTTCGAGAAACAAAGGCCAAGATCCCAGTCGAGAAGTCGTGGAAGATCAAGATCAAGAAGTAATGAAAGGACTGATGATAGAAATTCTGGGAATACACTTTATGTGACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAGGGAAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCTCGGACGCGAATTTCTCGTGGTTTTGCTTTTATTACAATGGATACTGTTGAGGATGCGAACCGCTGCATTAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCACGAAGAAAGCGGGCAAGAACTCCTACACCTGGACACTATCTTGGCCTGAAAAGTACTAGAGACTATGGATATCGTGGTGACCGCGGAAGGTATCGAGGAGGTGGATCTGGCCGTGATGATTATGCATATCGTGGTGACCGCGGAAGGTCTCCAAGGCGCTCACCATATCGAGGTGGTAGAGATTATTCACCGAGGCACTCACCACCACCATATGGTGGAAGATCTAGGAGGGAAAGGTCCAGGTCACTTCCTTACTCTCCATATGGTAGCCCAGATAGGAGGTATGCTCGTGGATCTAGGTGA 738 0.4892 MADSPPRRNSRSPSPWRAQSRSRSRSRSRPRSRSRSRSFEKQRPRSQSRSRGRSRSRSNERTDDRNSGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKSTRDYGYRGDRGRYRGGGSGRDDYAYRGDRGRSPRRSPYRGGRDYSPRHSPPPYGGRSRRERSRSLPYSPYGSPDRRYARGSR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01681 245 MobiDBLite consensus disorder prediction 33 64 - -
Pumo8g01681 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Pumo8g01681 245 CDD RRM_SF 71 143 - -
Pumo8g01681 245 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 57 227 - -
Pumo8g01681 245 MobiDBLite consensus disorder prediction 145 245 - -
Pumo8g01681 245 Gene3D - 8 153 IPR012677 -
Pumo8g01681 245 SUPERFAMILY RNA-binding domain, RBD 17 145 IPR035979 GO:0003676
Pumo8g01681 245 MobiDBLite consensus disorder prediction 166 205 - -
Pumo8g01681 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Pumo8g01681 245 MobiDBLite consensus disorder prediction 1 21 - -
Pumo8g01681 245 SMART rrm1_1 70 143 IPR000504 GO:0003723
Pumo8g01681 245 MobiDBLite consensus disorder prediction 1 75 - -
Pumo8g01681 245 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01681 Pumo-Chr8 52841836 52845089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01681 68 154 Eukaryotic Initiation Factors Gene Family AT1G49760 31.034 2.44e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01681 K12897 - gmx:100527350 283.493