Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01665 ATGTTTTCAACAGCAAAAACACCATCTGAGGAAGAGAAAAAAATAGATAATGGAAAGGATGGGGATAGTGATGAAGGGGAAGTGGAAGCAGCGAATGGGGCTAAAAAACTAGAGAATATAACAATGAAGGTAGTGTGTGGTAAGGGTTCAGGTTCAAGCCACAGTTTTTGTCGGGCTGATGAATGTGGGGTGGACTTGAGCATGGCCAAAAGTTACAACCGCCGTCACAAGGTTTGTGAGCGACATGCTAAGGCTCATGTCGTTTTAGTTTCCAGCATTCGTCAGAGGTTCTGCCAACAATGTAGCAAGTTCCATGAACTTGTACAGTTTGAAGACACGAAAAGAAGTTGCAGGAAAACATTGGCTGAGCATAATGAACGTAGAAGAAAAGCTCGCAAAGACATATCCTTAGGAGGTCATCACTCATCAGCTAGCATCAGTCACGCCCATCTCGAGTGA 459 0.4401 MFSTAKTPSEEEKKIDNGKDGDSDEGEVEAANGAKKLENITMKVVCGKGSGSSHSFCRADECGVDLSMAKSYNRRHKVCERHAKAHVVLVSSIRQRFCQQCSKFHELVQFEDTKRSCRKTLAEHNERRRKARKDISLGGHHSSASISHAHLE 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01665 152 Gene3D - 47 118 IPR036893 GO:0003677|GO:0005634
Pumo8g01665 152 MobiDBLite consensus disorder prediction 1 31 - -
Pumo8g01665 152 SUPERFAMILY SBT domain 56 134 IPR036893 GO:0003677|GO:0005634
Pumo8g01665 152 ProSiteProfiles Zinc finger SBP-type profile. 54 131 IPR004333 GO:0003677
Pumo8g01665 152 MobiDBLite consensus disorder prediction 123 152 - -
Pumo8g01665 152 Pfam SBP domain 57 130 IPR004333 GO:0003677
Pumo8g01665 152 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 132 IPR044817 GO:0003677
Pumo8g01665 152 MobiDBLite consensus disorder prediction 123 137 - -
Pumo8g01665 152 Coils Coil 114 134 - -
Pumo8g01665 152 MobiDBLite consensus disorder prediction 7 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01665 Pumo-Chr8 52610003 52610908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01665 56 134 SBP-box Gene Family AT3G15270 60.759 5.89e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo8g01665 SBP 6.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01665 - - gmx:100820357 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01665 8 52610003 52610908 Pumo8g01665 8 52610003 52610908 ECH