Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01658 ATGGGAGGTGACGCTACCGCCGCTGAGAGTGCCACCACGGAGTCGAACGCCGCCAATGGAGTCAACATCAACATTCGTTGCTCCAATGGTTCCAAGTTTTCTGTTCAGATTGGCCTCGATTCCACCGTCAGATCCTTCAAGGACATCGTGGCAAGCAACTGCGACATCCCCGCCGATCAACAGCGCCTGATTTACAAGGGTCGGATCCTCAAGGACGATCAAACTCTCCAAAGCTATGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTGCTCCTTCCAACACCACCACTGGTGGGACTAATAGTGGTGGTGCCAACACCACAACAGCTAACACGAGAGGTGTTGGTGCTAATGAGGGTGGAGGTTTAGGAGGGCCAGGATTTGGAGCTTCACTGTTTCCCGGACTTGGTGGTAACAATGGGATGGGAGGCGGTGGCCTCAATGGCTTATTTGGAGCGGGCTTTCCAGATCTTGAACAAATGCAGCAACCATTCTTGTCAAATCCCAATTTAGTGAGAGATATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCGGAGATAGTGCGGAACCTTATAATGAATAATCCTCAGATGCAAGAGCTAATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCCAGCACTCTTCGTCAAACACTTGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCCGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCTACTACAATGGCCGGTAACACAGGAAATGATGGTGCAGCAGTCAGGAACCAATCAACTAATCCCTCGACTACTAATTCTGAAGCAACTTCCCCTGTGCCCAATACGAACCCACTTCCTAATCCTTGGTCCTCTACTGGAACTGGAGGTGCCCAAAATAACACCAGAAGGTCAACTACTACTGGTGGGGATGCTCGACAGCAGACACCCACTGGCCTAGGAGGGCTTGGACTGCCAGATCTTGAAGGCATGATGGGTGGGATGGGTGGGATGCCAGATGCTGCTATGTTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGGGTCAATACCGAGCAGCGTGGCATACCTGATTTAAATTCTCTAAGGGAGGTGATGCAAAACCCAGAGTTTCTACGTCTGTTTTCCTCACCTGAGACACTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAGTAA 1362 0.4794 MGGDATAAESATTESNAANGVNINIRCSNGSKFSVQIGLDSTVRSFKDIVASNCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSNTTTGGTNSGGANTTTANTRGVGANEGGGLGGPGFGASLFPGLGGNNGMGGGGLNGLFGAGFPDLEQMQQPFLSNPNLVRDIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDGAAVRNQSTNPSTTNSEATSPVPNTNPLPNPWSSTGTGGAQNNTRRSTTTGGDARQQTPTGLGGLGLPDLEGMMGGMGGMPDAAMLTQLMQNPAISQMMQSILSNPQTMNQILGVNTEQRGIPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01658 453 FunFam Ubiquitin domain-containing protein DSK2b 18 105 - -
Pumo8g01658 453 ProSitePatterns Ubiquitin domain signature. 47 72 IPR019954 -
Pumo8g01658 453 Gene3D - 196 254 - -
Pumo8g01658 453 FunFam Ubiquitin domain-containing protein DSK2b 198 254 - -
Pumo8g01658 453 SMART CBM 147 188 IPR006636 -
Pumo8g01658 453 SMART CBM 400 435 IPR006636 -
Pumo8g01658 453 SMART CBM 355 397 IPR006636 -
Pumo8g01658 453 SMART CBM 201 240 IPR006636 -
Pumo8g01658 453 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Pumo8g01658 453 SMART ubq_7 21 92 IPR000626 GO:0005515
Pumo8g01658 453 SUPERFAMILY Ubiquitin-like 13 104 IPR029071 -
Pumo8g01658 453 Gene3D - 7 106 - -
Pumo8g01658 453 CDD Ubl_Dsk2p_like 21 93 - -
Pumo8g01658 453 MobiDBLite consensus disorder prediction 276 342 - -
Pumo8g01658 453 PANTHER UBIQUILIN 16 449 IPR015496 -
Pumo8g01658 453 MobiDBLite consensus disorder prediction 276 352 - -
Pumo8g01658 453 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01658 Pumo-Chr8 52472748 52478984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01658 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 1.57e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01658 K04523 - gmx:100797539 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01658 8 52472748 52478984 Pumo8g01658 8 52472748 52478984 ECH