Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01654 ATGGGTCTTTGCTTTGCTTCCCTCGCTCAAACACCCTCTAATAATTCCCCTCAGTATTCAGGTTCAGCGCGTGAGATGGGAATTACTGAAAGCACTAGTGTTAATGGAGGAAGCAGTAGCATTAATAGAAATAACATTGTGTTTCCGAGTGTGGAAACGCAGAACTTGAAGCAGTTCAATTATGCGGATCTGAAAGCAGCAACCAAGAGTTTCAAGTCCAATACACTGCTTGGTGAAGGAGGTTTTGGAAAAGTTTACAAAGGATGGTTGCATGAGAAGACACTGACACCCACCAAAGCTGGATCTGGAATGGTTGTTGCTGTTAAGAAATTGAATCCCGAAAGTTTGCAGGGCTTTAGGGAGTGGCAGTCAGAAATCAATTTTTTAGGAAGGATTTCTCACCCAAACCTGGTCAAGCTTTTGGGTTACTGTTGTGATGATGTCGAATTTCTCCTTGTGTACGAATTCATGCCAAAGGGAAGCTTGGAGAATCATCTCTTTAGAAGAAATACTAACAGAGAACCACTCTCTTGGGACACCCGAATCAAAATAGCTATTGGTGCAGCTCGGGGCTTGGCTTACTTGCACACCTCAGAAAAGCAAATCATATACAGAGATTTCAAAGCCTCCAATATACTACTTGATGAGGATTACAATGCAAAAATTTCAGATTTTGGGTTGGCCAAATTAGGCCCTTCTGGGGGAGATTCACACGTGAGTACCAGGATCATGGGAACATATGGCTATGCTGCTCCAGAATACATTGCAACAGGTCACCTTTATGTGAAGAGTGATGTTTATGGTTTTGGTGTAGTGCTGCTTGAAATGTTGACAGGGTTAAGGGCACTTGATAGAAACCGCCCCACAGAGCAGCAGAATCTAGTTGAATGGGCTAAGCCTTCTCTCTCTGATAAAAGAAAGTTGAAAAGCATTATGGATGAGAGGATAGAGGGTCAGTATTCAACCAAGGCAGCATTGAAAGCAGCACATCTTACTCTAAAATGCCTTGAAAATGACCCCAAAAGACGTCCTCCTATGAAAGATGTTCTCGACACATTGGAACGCATCGAAGCTATCAAGGATAGAAGGAAGTGA 1095 0.4283 MGLCFASLAQTPSNNSPQYSGSAREMGITESTSVNGGSSSINRNNIVFPSVETQNLKQFNYADLKAATKSFKSNTLLGEGGFGKVYKGWLHEKTLTPTKAGSGMVVAVKKLNPESLQGFREWQSEINFLGRISHPNLVKLLGYCCDDVEFLLVYEFMPKGSLENHLFRRNTNREPLSWDTRIKIAIGAARGLAYLHTSEKQIIYRDFKASNILLDEDYNAKISDFGLAKLGPSGGDSHVSTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLRALDRNRPTEQQNLVEWAKPSLSDKRKLKSIMDERIEGQYSTKAALKAAHLTLKCLENDPKRRPPMKDVLDTLERIEAIKDRRK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01654 364 Pfam Protein tyrosine and serine/threonine kinase 74 353 IPR001245 GO:0004672|GO:0006468
Pumo8g01654 364 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01654 364 Gene3D Phosphorylase Kinase; domain 1 42 156 - -
Pumo8g01654 364 SUPERFAMILY Protein kinase-like (PK-like) 45 355 IPR011009 -
Pumo8g01654 364 PANTHER OS01G0588500 PROTEIN-RELATED 34 357 - -
Pumo8g01654 364 CDD STKc_IRAK 77 356 - -
Pumo8g01654 364 ProSitePatterns Protein kinases ATP-binding region signature. 77 110 IPR017441 GO:0005524
Pumo8g01654 364 FunFam Serine/threonine-protein kinase PBS1 157 364 - -
Pumo8g01654 364 Gene3D Transferase(Phosphotransferase) domain 1 157 364 - -
Pumo8g01654 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Pumo8g01654 364 FunFam Serine/threonine-protein kinase BIK1 38 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01654 Pumo-Chr8 52180323 52183489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01654 42 353 Glycoside Hydrolase AT3G07070 50.159 5.20e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo8g01654 PK_Tyr_Ser-Thr 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01654 - - gmx:100777578 667.922