Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01653 ATGGATTCCTCGCACACCAACACCACTTTGCTCACCAACCTACTAGTCTTCAACAACACCGTCCAACCAGAGTTGGTGAGGAGCGTGCATGTGTACCGCCAAGGGGGTGGGGAGGAAAGGGAAGTTGAGAGAGAGTTTGTGTTTTCAGAGAGTGGCTCCTATGGGGAAATGCAGGCTACCCCAATTCTTGGATTGGTGAAATCTCGTGTTTCTCAAGTGTGTGAAGGGTACCGGAATGGAGTGTGGCTTTGTATCTTTGCGTTTCATGCCGATCACACTCCTCAATTTTCCCGCATTCCACCGCTTTTGTTGGTCACAAGAAACCCAAAGCTTAAGATGATTCCAAACTTGCTTGATGATCTCCACATGATATACAAGTTGGACCGGAAGGAGGAAGACAGAGATATAGCACAAGACTCTACAGGGGAAGAAAGGCAAGGAAACAGCAACAATTGCCAACCATCACGGAAAGTCTTTCCTGTTCTTGATCAGGATCTCAATTGTCTTCCTTATGAAGAAGACGAGTCTGAGTTACCGGACAATGAGACAGATGTTGAAAGCTCACCAGGTTTGCTAGGGAAGAAAAAGAGGGCACCCAGTGACCTTGTAGCAAAAATTTCTTTATCAGATTTGGTCAAGTACTTTGGTATGCCAATTGTAGAAGCATCAAGAAATCTAAATGTTGGGCTTACTGTTCTCAAGAGAAAGTGCAGAGAATTTGGTATTCCCCGCTGGCCTCATAGGAAGATCAAATCACTTGACAGTCTCATTCATGATCTTCAGGAAGAGGCAAAGAACCAAGAATTGGAGGACAGGGAAGCAGCCATGGCAGTGGCAAAGAGGCAAAGGATGTTGGAGAGTGAAAAGGAAAACATAGAGAAGAAACCCTTCATGGACATACAAAGTGAGACCAAGAGATTCAGGCAAGATGTTTTCAAGAGAAGACACAGAGCTAGAGCTATTGGAAAACAGAATTCTACAGTATCCAACACATAG 996 0.4478 MDSSHTNTTLLTNLLVFNNTVQPELVRSVHVYRQGGGEEREVEREFVFSESGSYGEMQATPILGLVKSRVSQVCEGYRNGVWLCIFAFHADHTPQFSRIPPLLLVTRNPKLKMIPNLLDDLHMIYKLDRKEEDRDIAQDSTGEERQGNSNNCQPSRKVFPVLDQDLNCLPYEEDESELPDNETDVESSPGLLGKKKRAPSDLVAKISLSDLVKYFGMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKNQELEDREAAMAVAKRQRMLESEKENIEKKPFMDIQSETKRFRQDVFKRRHRARAIGKQNSTVSNT 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01653 331 Coils Coil 250 270 - -
Pumo8g01653 331 ProSiteProfiles RWP-RK domain profile. 188 273 IPR003035 -
Pumo8g01653 331 MobiDBLite consensus disorder prediction 142 156 - -
Pumo8g01653 331 Pfam RWP-RK domain 206 253 IPR003035 -
Pumo8g01653 331 PANTHER PROTEIN RKD4 94 326 IPR044607 GO:0003700
Pumo8g01653 331 MobiDBLite consensus disorder prediction 172 194 - -
Pumo8g01653 331 MobiDBLite consensus disorder prediction 135 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01653 Pumo-Chr8 52162438 52167859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01653 21 331 AtRKD Transcription Factor Family AT4G35590 49.693 1.11e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pumo8g01653 RWP-RK 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01653 - - gmx:113001653 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01653 8 52162438 52167859 Pumo8g01653 8 52162438 52167859 ECH