Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01624 ATGACGCGCGCGTTTAGAATTCTCAAGTCCGCGGACAACGCCACCGCCGTGGCGGCGGCGGCTCCGCCTCCTGAGGCGGTGGCGCTGGAGTCTGATTTCGTGGTGATTCTCGCGGCGCTGCTCTGCGCCCTCATCTGCGTGGTGGGACTCGTCGCTGTCGCGCGGTGCGCGTGGCTCCGGCGAGGGTCCGGCGCCGGAAGCTCCCCCCGGCAGGCCCTGGCGAACAAGGGCCTGAAGAAGAAGGTGCTGCAGTCGCTGCCGAAGTTCGCGTACGTGGACAGCAACCCGAGCAAGTGGGTGGCGACGTCGGAATGCGCGATTTGCCTCGCCGAGTTCGCCGCCGGCGACGAGATCCGCGTGCTGCCGCAGTGCGGCCACGGCTTCCACGTGCCCTGCATCGACACGTGGCTTGGGTCCCACTCCTCGTGCCCCTCCTGTCGGCAGGTTCTGGCGGTGGCCAGGTGTCAGAAGTGCGGCCGGTTTCCGGCCACCGGCGCCGGAGCTTCCAGAACGGCGGCCACCGAACCCGATTTGAAGTCCAGAGAAGACAACAATGCCGCTAGTAACAGTAGTAATAATAACAATAACAGCGACAGCGGCAGTGGTGACGCTACTGGTGGTAGCAGCAGTGATAATAATAATAATTGTAACATGGAACATCATCACAACCACCATGTGAATAGTGGGTTCTTGCCCTGA 699 0.6266 MTRAFRILKSADNATAVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGSGAGSSPRQALANKGLKKKVLQSLPKFAYVDSNPSKWVATSECAICLAEFAAGDEIRVLPQCGHGFHVPCIDTWLGSHSSCPSCRQVLAVARCQKCGRFPATGAGASRTAATEPDLKSREDNNAASNSSNNNNNSDSGSGDATGGSSSDNNNNCNMEHHHNHHVNSGFLP 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01624 232 CDD RING-H2_EL5-like 104 147 - -
Pumo8g01624 232 MobiDBLite consensus disorder prediction 183 216 - -
Pumo8g01624 232 Pfam Ring finger domain 104 147 IPR001841 -
Pumo8g01624 232 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Pumo8g01624 232 SMART FANCL_C_2 101 155 - -
Pumo8g01624 232 SUPERFAMILY RING/U-box 84 152 - -
Pumo8g01624 232 SMART ring_2 105 146 IPR001841 -
Pumo8g01624 232 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 22 159 - -
Pumo8g01624 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 152 IPR013083 -
Pumo8g01624 232 MobiDBLite consensus disorder prediction 165 232 - -
Pumo8g01624 232 FunFam E3 ubiquitin-protein ligase ATL6 67 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01624 Pumo-Chr8 51579806 51581178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01624 5 183 C3H Transcription Factor Family AT1G76410 59.358 7.71e-65 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01624 - - gmx:100787383 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01624 8 51579806 51581178 Pumo8g01624 8 51579806 51581178 ECH
Pumo8g01624 8 51579806 51581178 Pumo10g01638 10 21563654 21564738 ECH