Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01609 ATGCTCAGATTTTGGATAGGACTTGAGTCTGAAGAAGCTTCTGGTGCGAAGGTGGAAGCTGATGAATTTCCCCAGACTAATAAGGAGGCTGAGAATAATGATGATATTCATCAAAATAATAATGGTGTTGTTGAAATGGCTGTGGAAGTGAATCCTGAAGCCTGTGAAGTGGCTGATAGTAAAGCGTGTGATGATGGTGACCCTGTGCCTGCAAGTCATAATGAGCCTGCTATGCCACAACCTGCTCCTGCTGATACAAATGCTGAAATTATGAATGTATTAGAAGTTGAGAATAAGACTGATGAAAAGCAAGCTACTGAACCTGCAGATAACGGGAATTCAAACTCAAAGCACATGCTTTTCTTGGATGCTGACCATTCCTATGATGGTAATGAGTCAGGAACAGAGGAGGAGCAGTCAGCATTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAGTTCTATGGAGAAGGACTAAATTGCCTTAAGCTGTGGAGAGCTGTAACAAGATTGGGTGGCTATGATAAGGTGACTTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACCACTGTTTCATGGACTTTTCGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAAATAAAAGGTGGAGAGCTGAATGTGCCTATTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCTCGGAGAGATGCTGCAGCACGAGCTATGCAGGGTTGGCACTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATGCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTACACAAACGTAAGAAACCATCTTCACCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCATCTAAACCACAATTGGACACAACTGTGATTGATATTGGACCTCCTGCTGATTGGGTAAAAGTTAATATACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTCCGTGTACAGTCAGACCCAGCAGGACGCCTAGTCATAAGTGGTGAGCCTGAGCATCCCAACAATCCTTGGGGCGTGACACCTTTCAAAAAGGTTGTCAGTTTACCCTCAAGAATTGATCCTCATCAGACGTCCGCAGTGGTGACGCTGCATGGGCAGTTGTTTGTTCGTGTCCCATTTGAACAATCAGAATAG 1299 0.4342 MLRFWIGLESEEASGAKVEADEFPQTNKEAENNDDIHQNNNGVVEMAVEVNPEACEVADSKACDDGDPVPASHNEPAMPQPAPADTNAEIMNVLEVENKTDEKQATEPADNGNSNSKHMLFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPIASHPEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNAVSVQKREKQLKSINLHKRKKPSSPYMDNAVKAARSKPSKPQLDTTVIDIGPPADWVKVNIQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01609 432 Pfam Hsp20/alpha crystallin family 348 431 IPR002068 -
Pumo8g01609 432 SMART bright_3 137 228 IPR001606 GO:0003677
Pumo8g01609 432 Gene3D - 333 432 IPR008978 -
Pumo8g01609 432 MobiDBLite consensus disorder prediction 59 84 - -
Pumo8g01609 432 CDD ACD_sHsps-like 347 427 - -
Pumo8g01609 432 CDD ARID 138 223 - -
Pumo8g01609 432 SUPERFAMILY HSP20-like chaperones 341 428 IPR008978 -
Pumo8g01609 432 SMART ARID_2 133 223 - -
Pumo8g01609 432 MobiDBLite consensus disorder prediction 14 35 - -
Pumo8g01609 432 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 332 432 IPR002068 -
Pumo8g01609 432 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 27 431 IPR045147 GO:0006357
Pumo8g01609 432 MobiDBLite consensus disorder prediction 13 38 - -
Pumo8g01609 432 FunFam AT-rich interactive domain-containing protein 3 324 432 - -
Pumo8g01609 432 FunFam AT-rich interactive domain-containing protein 3 136 235 - -
Pumo8g01609 432 ProSiteProfiles ARID domain profile. 136 227 IPR001606 GO:0003677
Pumo8g01609 432 Gene3D - 136 233 IPR036431 GO:0003677
Pumo8g01609 432 Pfam ARID/BRIGHT DNA binding domain 139 223 IPR001606 GO:0003677
Pumo8g01609 432 SUPERFAMILY ARID-like 131 239 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01609 Pumo-Chr8 51399275 51406626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01609 117 430 ARID Transcription Factor Family AT1G76510 62.696 8.86e-131 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pumo8g01609 HSP20 7.8e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01609 - - gmx:100791081 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01609 8 51399275 51406626 Pumo8g01609 8 51399275 51406626 ECH