LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo8g01603	ATGTTTCGCCTCCAATGCAGCGCTTACTCCGCCGTAATCGCCGCCGTCACCACCATCCTCCTCCTGTTCCCGGCGGCGAGTTCCCAAGCCCAGATTCTCAAAACAGATACCCACTTTTTCGGTCCCTTCAACCAGTCCTACTACACCACCTTCGCCGTGTTGCACAACGCCGCCATCAACCTCGACGCCCTCCAAGTAACTCCGGACAGCACCGGCAACGTCTCCCTCGCCAACCGCTCCGGCAGAATCTTCTTGAACACCCCCTTCACGCTCTGGGACGACGACGACAACCTCAACGGAAAACTCGTGTCGTTCAACACCTCCTTCCTCATCAACGTTTACCGTCCCAAAAACGACACTCCCGGCGAGGGCATAACCTTCCTCATCGCGCCTTCCACCACCGTCCCTGACAACAGCCACGGCCAGTTCCTCGGCCTCACCAACGCCTCCACCGACGGCAACGCCACCAACAAAATCGTCGCCGTCGAACTTGACACCGTCAAGCAGGACTTCGACCCCGACGACAACCACATCGGGTTGGACATTAACAGCGTCAGGTCCAAAGTTAGTGTCTCCCTGACTCCGTTGGGTTTCGAGATCGTGCCCAACGGCACGCGCTTCCACGTGCTCTGGGTGGAGTATCGCGGTGACCGGAAGGTGATTGACGTGTACATCGCGGAGCAGCCCGATAAGGATGCACCCATAGTGGCGAAACCGGCTAAGCCGGTTTTGAGTTCGAGTCTCGATCTTAAACAAGTTCTCAACAAGGTTTCTTATTTTGGGTTCTCTGCTTCGACCGGTGACAACGTTGAACTAAACTGCGTGCTGAAGTGGAACATTTCTATTGAGGTTTTCCCCAAAGAGAAAGGGAATGCGAAAGTGTTGAAGATTGGGTTGGGTGTTGGGGTGCCTCTGGTGGTTCTTATTGTGGCTGGTGTTGTGGGGTGGGTTTATTGGTTGAAAAGGAAGAATAGGGGAAATGATACTCAGATTTTGGGAACTCTCAAGAGTCTACCTGGAACTCCCAGAGAGTTTAGGTATCAGGAACTGAAGAAAGCGACTAATAATTTCGATGACAAGCATAAGCTCGGACAAGGTGGATACGGCGTCGTTTATAGAGGGACAATTCCGAAGGACAACTTGGAAGTGGCGGTTAAGATGTTCTCCAGAGATAACATGAAAAGCGCTGATGATTTCTTGGCCGAACTCACCATTATCAATCGCCTTCGTCACAAAAACCTTGTTCGCTTACTCGGATGGTGTCACAAAAACGGGGTGTTGCTCTTAGTGTACGATTACATGCCCAATGGAAGTTTGGACAACCACATTTTCTGTGAGGAAGGTAGCAGCACTACCCCACTAAGTTGGCCCCTAAGGTACAAGATCATAACAGGGGTGGCCTCTGCATTGAACTACCTACACAACGAGTATGATCAGAAAGTGGTCCACAGAGACCTTAAGGCCAGCAACATCATGTTGGACTCAGACTTCAATGCCCGGCTAGGCGACTTTGGCTTGGCGCGTGCATTGGAGAATGATAAAACTTCGTATGCAGAGATGGAAGGAGTGCATGGCACAATGGGGTACATTGCACCAGAGTGCTTCCACACTGGGAGGGCCACAAGGGAATCAGATGTTTTTGGGTTTGGAGCAGTGTTACTTGAAGTAGTGTGTGGTCAAAGACCATGGACAAAGATTGAGGGGTATGAGTGCTTGGTGGATTGGGTGTGGCACCTGCATCGTGAGCAAAGGATACTTGATGCAGTGGATCCGAGACTTGGGAATGACTGTGTGGCTGAAGAGGCAGAGAGGGTTCTGAAATTGGGACTAGCATGCTCTCACCCCATTGCAAGTGAGAGACCAAAGATGCAAACAATTGTTCAGATAATATCAGGTTCAGTGCATGTGCCTCATGTCCCACCTTTCAAGCCAGCTTTTGTGTGGCCCGCATGTGGATCTATCAAGCCTTGTAAGTGA	1977	0.5124	MFRLQCSAYSAVIAAVTTILLLFPAASSQAQILKTDTHFFGPFNQSYYTTFAVLHNAAINLDALQVTPDSTGNVSLANRSGRIFLNTPFTLWDDDDNLNGKLVSFNTSFLINVYRPKNDTPGEGITFLIAPSTTVPDNSHGQFLGLTNASTDGNATNKIVAVELDTVKQDFDPDDNHIGLDINSVRSKVSVSLTPLGFEIVPNGTRFHVLWVEYRGDRKVIDVYIAEQPDKDAPIVAKPAKPVLSSSLDLKQVLNKVSYFGFSASTGDNVELNCVLKWNISIEVFPKEKGNAKVLKIGLGVGVPLVVLIVAGVVGWVYWLKRKNRGNDTQILGTLKSLPGTPREFRYQELKKATNNFDDKHKLGQGGYGVVYRGTIPKDNLEVAVKMFSRDNMKSADDFLAELTIINRLRHKNLVRLLGWCHKNGVLLLVYDYMPNGSLDNHIFCEEGSSTTPLSWPLRYKIITGVASALNYLHNEYDQKVVHRDLKASNIMLDSDFNARLGDFGLARALENDKTSYAEMEGVHGTMGYIAPECFHTGRATRESDVFGFGAVLLEVVCGQRPWTKIEGYECLVDWVWHLHREQRILDAVDPRLGNDCVAEEAERVLKLGLACSHPIASERPKMQTIVQIISGSVHVPHVPPFKPAFVWPACGSIKPCK	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo8g01603	658	ProSiteProfiles	Protein kinase domain profile.	357	639	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo8g01603	658	FunFam	probable L-type lectin-domain containing receptor kinase S.5	342	433	-	-
	Pumo8g01603	658	FunFam	Putative L-type lectin-domain containing receptor kinase S.5	34	295	-	-
	Pumo8g01603	658	SMART	serkin_6	357	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo8g01603	658	Pfam	Protein kinase domain	358	628	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo8g01603	658	Gene3D	-	37	297	-	-
	Pumo8g01603	658	Pfam	Legume lectin domain	49	289	IPR001220	GO:0030246
	Pumo8g01603	658	SUPERFAMILY	Protein kinase-like (PK-like)	339	644	IPR011009	-
	Pumo8g01603	658	FunFam	probable L-type lectin-domain containing receptor kinase S.5	434	635	-	-
	Pumo8g01603	658	ProSitePatterns	Protein kinases ATP-binding region signature.	363	386	IPR017441	GO:0005524
	Pumo8g01603	658	SUPERFAMILY	Concanavalin A-like lectins/glucanases	47	290	IPR013320	-
	Pumo8g01603	658	ProSitePatterns	Legume lectins beta-chain signature.	160	166	IPR019825	-
	Pumo8g01603	658	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	481	493	IPR008271	GO:0004672\|GO:0006468
	Pumo8g01603	658	CDD	STKc_IRAK	363	630	-	-
	Pumo8g01603	658	Gene3D	Phosphorylase Kinase; domain 1	342	433	-	-
	Pumo8g01603	658	CDD	lectin_legume_LecRK_Arcelin_ConA	37	279	IPR001220	GO:0030246
	Pumo8g01603	658	PANTHER	-	68	634	-	-
	Pumo8g01603	658	Gene3D	Transferase(Phosphotransferase) domain 1	434	636	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo8g01603	Pumo-Chr8	51315493	51320372	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo8g01603	54	652	Receptor kinase-like Gene Family	AT5G55830	36.967	2.33e-125	385

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pumo8g01603		Pkinase	4.5e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo8g01603	-		-	gmx:100784558	1165.21