Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01560 ATGAAGAGCACAAACGACGACGGTTCAACGCAAGATCTCGATCCTCAGAGTGATCACAGCTCCGATTACTTAGCTAACCCCCAACCGCACCCTCAGCCCCGCCGTCCGCGGGGTTTCGCGGCGGCGGCGGCCACCACCAATTCCGGCGGCAAGGGGAAGAAGGAGAGAGAGAAGGAGAAGGAGCGCACAAAGCTCCGCGAGCGACACCGCCGAGCCATCACCAGCCGCATGCTCGCCGGACTCCGCCAGTACGGGAATTTCCCCCTGCCGGCGCGTGCCGACATGAACGACGTACTCGCCGCGCTCGCGCGTGAGGCTGGCTGGGTCGTTGATGCCGATGGCACCACCTACCGCCAGTGCCCCCCTCCCTCTCACATGGGGTCATTTGCAGCTAGGTCTGTTGAAAGTCAACTCTCTGGTGGTTCTTTGAGGAATTGTTCTGTTAAGGAAACGATTGAGAATCAGACATCTGTGCTTAGAATTGATGAATGCTTGTCACCTGCATCCATTGATTCTGTTGTAATTGCAGAAAGGGACTCGAAGAATGAGAAATATACAAATGCTAGCCCCATCAATACAGTTGACTGCTTGGAGCCCGATCAGCTTATGCAAGATATTCATTCTGGGGTGCATGAAAATGACTTTACTGGCACGCCATACGTTCCTGTTTATGTAAAGCTTCCAGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATAAGGCAGGAGCTAATCCATATAAAGTCTTTAAATGTAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCTCACAGAAATATGTGTGGTCTGGTTATAGGGAGCTTTTTAACATTATTAGAGAATTCAAACTGAAGTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTGATTTCTCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGATATATTCTTCACAGATCGTGAAGGACGGAGGAATACTGAATGCCTTTCTTGGGGGATTGACAAAGAACGAGTTCTCAAAGGCAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCTGTTGAGGTTGGACTTGGAGCATCTGGAGAGCTGAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTACGCAGAGCAGCCAAATTACGTGGTCACTCTTTCTGGGCCAGAGGACCTGATAATGCTGGAAATTACAATTCTATGCCACATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGACAACTATTATGGACGCTTCTTCTTACATTGGTACGCCCAGACATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAACCCTTGCTTTCGAGGAAACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTATAAGACTCCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAATCCAACAAATCAGGATGGATACTCTCCTGTGTTTGAGGTTCTGAGAAAACATGCTGTCACCATGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGCCAGGAAGCTAATGAATCATTGATTGATCCAGAGGGTTTGAGTTGGCAGGTGTTAAACTCAGCTTGGGATCGTGGGTTGATGGCTGCTGGAGAGAATGCACTCCTTTGCTATGATAGAGAAGGGTACAAGAGATTGGTTGAGATGGCAAAGCCCAGAAATGATCCTGATCGCCGGCACTTCTCATTCTTTGTTTATCAGCAACCATCTTTGCTGCAGGCAAATGTTTGCTTGTCCGATCTGGATTTCTTCGTCAAATGCATGCATGGTAAGGATCCTTAG 1953 0.4649 MKSTNDDGSTQDLDPQSDHSSDYLANPQPHPQPRRPRGFAAAAATTNSGGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSHMGSFAARSVESQLSGGSLRNCSVKETIENQTSVLRIDECLSPASIDSVVIAERDSKNEKYTNASPINTVDCLEPDQLMQDIHSGVHENDFTGTPYVPVYVKLPAGIINKFCQLIDPEGIRQELIHIKSLNVDGVVVDCWWGIVEGWSSQKYVWSGYRELFNIIREFKLKLQVVMAFHECGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEVGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGNYNSMPHETGFFCERGDYDNYYGRFFLHWYAQTLIDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEVLRKHAVTMKFVCLGFHLSSQEANESLIDPEGLSWQVLNSAWDRGLMAAGENALLCYDREGYKRLVEMAKPRNDPDRRHFSFFVYQQPSLLQANVCLSDLDFFVKCMHGKDP 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01560 650 SUPERFAMILY (Trans)glycosidases 215 647 IPR017853 -
Pumo8g01560 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 276 294 IPR001554 GO:0000272|GO:0016161
Pumo8g01560 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 515 526 IPR001554 GO:0000272|GO:0016161
Pumo8g01560 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 255 269 IPR001554 GO:0000272|GO:0016161
Pumo8g01560 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 533 556 IPR001554 GO:0000272|GO:0016161
Pumo8g01560 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 391 413 IPR001554 GO:0000272|GO:0016161
Pumo8g01560 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 571 593 IPR001554 GO:0000272|GO:0016161
Pumo8g01560 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 298 319 IPR001554 GO:0000272|GO:0016161
Pumo8g01560 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 498 514 IPR001554 GO:0000272|GO:0016161
Pumo8g01560 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 464 483 IPR001554 GO:0000272|GO:0016161
Pumo8g01560 650 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 154 647 IPR001554 GO:0000272|GO:0016161
Pumo8g01560 650 Pfam BES1/BZR1 plant transcription factor, N-terminal 50 197 IPR008540 -
Pumo8g01560 650 MobiDBLite consensus disorder prediction 1 27 - -
Pumo8g01560 650 MobiDBLite consensus disorder prediction 50 67 - -
Pumo8g01560 650 Pfam Glycosyl hydrolase family 14 239 614 IPR001554 GO:0000272|GO:0016161
Pumo8g01560 650 Gene3D Glycosidases 211 650 - -
Pumo8g01560 650 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01560 Pumo-Chr8 50649501 50655619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01560 12 647 Glycoside Hydrolase AT5G45300 66.366 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Pumo8g01560 Glyco_hydro_14 5.8e-87 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01560 K01177 - gmx:100777004 1268.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01560 8 50649501 50655619 Pumo8g01560 8 50649501 50655619 ECH