Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01559 ATGGGGTCCAGTGCCAGCAAAGCCACGTCATCATCGTCGTCTTCGGGGAGTTTCAGGAAGGGTCGATCTAAGGGACACCGAGGTTTCCCATCGTATTGTCTGGGAACTTCGTCTGGATCTCGTGACATTGATAGTGACGACCAGGTTTGTGATCAGCATAAAGTAAATGGAGATGATGTGACATACACCAGTGGCAATGAAATAGATTCAGATGAGGGTAAGACAGAGTCTTTTAGAAAGGTTAAATCTGATAAATCTGATGAAGTGCCTTGTGTGCCTTCTAACATTGACCTTGAGGAGTGGGGTCACACTGCATCCAGAACTGGTACCAGCTCTGCACATTCTTCTTCAAATCAGTCCTTGAACCCTTCAAGTCGGTTCCTTTCTCGCTTTAGCCTTGTTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGGTCATCTAGGCCTTGCCCAGCTTCTTCAGAGAGTCTCTCAATATTTAACAATGAAGATGAGCTTAATCTGCCTCCAGGGCTTCCTGCCAGCTTGATCAATAGAAATGAAACTCAACACCGTAGTGACTTGCGTAATGCATCTTTTGCTAGTCAAGTGCCTATACAGTGTCATGAAGAAGCTTCTAATAATTTAAGATCTAATGCCCCGGCATTGGTTTCCCCTGGCAACTTGGTTGGCAGTCGCACACTTTCTTCTGTCCAGGATGTGGTCAGAGATGGAAATGGTACAAGAGAAGTGCCGGATGTGAACTTGTTTTCTCCAAGAATTCATACTGATACAGAAAATATTGAGACTAGACATACTGATAGACGAAATGGAGCTCGAGAGCCTGTTGAGCGTAATGTTCGTTTTAGCCGGACATTAAGTGTTGGAAGGCTCCGTGACAGGGTTCTTCGCCGATCAACAGTATCGGACTTCACATTTTGCCCTCTGCAACGAGAGAGAGATGCTAGTCAAGATAATGGAAGACGAGTAGGGGAGAGAGACACAAGAGTGTCACCAACTGGTCGTAATGGTGCAAATTCTTCTACACCTAGATATCCTCTACCCAGTACACCTAGCTCCTTGTTTGGCATCCAAGACTATGAAGTTGAGACTTCACGATCTAGAGAAACTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTCGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTATCTGGTCAACATAGAAATGGTCGTTGTGCATGCAGAATAAATAGTCGTGATACCAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCTGTTCCTGCACCTAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATATACAAAGTTGCACAAACATCAAGAAGAACCTGTACAGTGTTACATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGAGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTTTGCCCACTATGTCGAGGGGATATCTGTGTATCTGATTCACTGCCAAGGGAGAACTAA 1707 0.4429 MGSSASKATSSSSSSGSFRKGRSKGHRGFPSYCLGTSSGSRDIDSDDQVCDQHKVNGDDVTYTSGNEIDSDEGKTESFRKVKSDKSDEVPCVPSNIDLEEWGHTASRTGTSSAHSSSNQSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPASSESLSIFNNEDELNLPPGLPASLINRNETQHRSDLRNASFASQVPIQCHEEASNNLRSNAPALVSPGNLVGSRTLSSVQDVVRDGNGTREVPDVNLFSPRIHTDTENIETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTVSDFTFCPLQRERDASQDNGRRVGERDTRVSPTGRNGANSSTPRYPLPSTPSSLFGIQDYEVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRINSRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICVSDSLPREN 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01559 568 MobiDBLite consensus disorder prediction 336 358 - -
Pumo8g01559 568 SMART ring_2 513 554 IPR001841 -
Pumo8g01559 568 MobiDBLite consensus disorder prediction 1 123 - -
Pumo8g01559 568 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 567 - -
Pumo8g01559 568 MobiDBLite consensus disorder prediction 69 87 - -
Pumo8g01559 568 MobiDBLite consensus disorder prediction 318 333 - -
Pumo8g01559 568 MobiDBLite consensus disorder prediction 1 19 - -
Pumo8g01559 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 560 IPR013083 -
Pumo8g01559 568 ProSiteProfiles Zinc finger RING-type profile. 513 555 IPR001841 -
Pumo8g01559 568 SUPERFAMILY RING/U-box 491 561 - -
Pumo8g01559 568 Pfam Ring finger domain 512 555 IPR001841 -
Pumo8g01559 568 FunFam Putative RING zinc finger domain superfamily protein 482 560 - -
Pumo8g01559 568 MobiDBLite consensus disorder prediction 316 358 - -
Pumo8g01559 568 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01559 Pumo-Chr8 50642106 50647263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01559 235 562 C3H Transcription Factor Family AT5G45290 62.315 2.94e-121 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01559 - - gmx:100815830 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01559 8 50642106 50647263 Pumo8g01559 8 50642106 50647263 ECH