Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01550 ATGTTTGGTGGCGGAGGGGACGACGCGCTGGCGGCGCGGATGGGCATGGTGACGCCGTCGCTGCTGAATCCGGTGGCGACGGCGTCGGTGATGTCCGGCGAGGTGTCTGTGGCGGCGGCGGCGAGGGAGGAGAGATTGCCGGCTCAGCCGCAGTGGAGCCAGCAGGAGACGCGGGAGTTCATAGCGATTCGAGCGGAGCTGGAGAGGGACTTCACGGCGTCGAAGCGGAACAAGACGCTTTGGGAAGTGGTGAGTGCGAAGATGAGGGAGAGAGGGTTCAGGAGAAGCCCCGAACAGTGCAAATGCAAGTGGAAGAACCTCGTTAATCGCTATAAGGGAAAAGAGACATCTGACCCAGAGCATGGCAGGCAATGTCCATTTTTTGAAGAATTGCATGCCGTCTTTACCCAAAGGGCTCATAATATGCAACGATTGCTTCTTGAATCTGAAACTCGTACTGCTCAAACCAAGAAAGGAGTGAAAAGATCAAGTGGATACCGGTCCTCAGAGGAACTCTCAGAAGATGACGATGAGGTTGAATATGACAGCGAAGAGGAAAAACCTTCCAGAAGCAATACCCGCAAAAGAAAAGTTGACAAAGTTGGAGTGGAGAAGTCTTCAAGGGCAAACAATCCATCAAATGCTGCCAGTAACAGTACTAGCAGTATTCAGGAAATGCTCAAGGAATTTTTCCAGCACCAGTTAAGGATGGAGATGCAGTGGAAGGAGATGATGGAAAGGCGTGCTCATGAAAGACAGTTGTTTGAGCAGGAATGGCGGCAGTCGATGGAGAAGCTTGAGAGGGAGAGGTTAATGATTGAACAGGCATGGAGGGAGAGAGAAGAACAGAGGAGAATGAGAGAAGAGAGTAGGGCAGAGAGAAGGGATGCTTTGTTGACGACCCTTTTGAACAAACTCATTAATGAATCTAACTAA 936 0.5096 MFGGGGDDALAARMGMVTPSLLNPVATASVMSGEVSVAAAAREERLPAQPQWSQQETREFIAIRAELERDFTASKRNKTLWEVVSAKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEHGRQCPFFEELHAVFTQRAHNMQRLLLESETRTAQTKKGVKRSSGYRSSEELSEDDDEVEYDSEEEKPSRSNTRKRKVDKVGVEKSSRANNPSNAASNSTSSIQEMLKEFFQHQLRMEMQWKEMMERRAHERQLFEQEWRQSMEKLERERLMIEQAWREREEQRRMREESRAERRDALLTTLLNKLINESN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01550 311 MobiDBLite consensus disorder prediction 184 204 - -
Pumo8g01550 311 Gene3D - 52 113 - -
Pumo8g01550 311 ProSiteProfiles Myb-like domain profile. 52 108 IPR001005 -
Pumo8g01550 311 PANTHER FI21293P1 42 307 - -
Pumo8g01550 311 MobiDBLite consensus disorder prediction 147 221 - -
Pumo8g01550 311 MobiDBLite consensus disorder prediction 147 162 - -
Pumo8g01550 311 FunFam Zinc finger and SCAN domain-containing 20 52 113 - -
Pumo8g01550 311 Coils Coil 256 276 - -
Pumo8g01550 311 MobiDBLite consensus disorder prediction 206 221 - -
Pumo8g01550 311 SMART sant 48 110 IPR001005 -
Pumo8g01550 311 Coils Coil 299 311 - -
Pumo8g01550 311 CDD GT1 50 115 - -
Pumo8g01550 311 Pfam Myb/SANT-like DNA-binding domain 50 133 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01550 Pumo-Chr8 50428874 50431446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01550 18 306 Trihelix Transcription Factor Family AT2G38250 42.662 1.11e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo8g01550 Myb_DNA-bind_4 1.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01550 - - gmx:100812635 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01550 8 50428874 50431446 Pumo8g01550 8 50428874 50431446 ECH