Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01541 ATGGGTTACGATTCGGATAGCCCCTCGCAGGATGGGAGGGATGAAGATGATGAAGAAGAATATGAGGAGTCTGGCAAGGGTAATCGTTTTCTTGGGTTCATGTTTGGAAATGTAGATAATTCTGGTGATCTCGATGTTGATTATCTTGATGAGGATGCAAAGGAGCATCTTTCTGCATTAGCCGATAAGCTGGGTCCATCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACCACCTGACGTTGTTGAACAAGACTGTGATGAAAAAGCTGAAGATGCTGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGACAGAAGCTGCCAATGAAGAGGACTATTTATTGCCAAAAAAAGAATTTTTCTCTGCTGAAGCCTCTGTATGTTTGGAATCCAAAGCTTCTGTCTTTGATGATGAAAATTATGATGAAGAATCTGAAAAGGAGCAAGACTTTGTGAATGAGGATTCTAAAGTTGATAACATCCCTTTAGCTGGGGAGCAGGAAGAGAGTTTTGTAGATGCATCTAAAGAAGAGAGTTCTCTTGAACATGAATTACATGTTGACTCACCACAGACTGAAGAATTGGATGTTGATGTACAAAAACTTGAGGAGGAAGGGCCTGAAGTTCAGAAAAGGTCTACAGCTATGCCATTGCCTGTTTTATATGTGGAAGATGGTGTGGCAATTTTACGCTTCTCTGAAATCTTTGGCATTCATGAACCTCTTAGAAAAGGAGAAAGGAGAGAGCATCGGCATTCTATTCCTAGAGATAGATACAAGTCTTTGGATTTAACTGATGATTTTGTAGAAGAGGATGAAGAGGAATTCCTCAAGGGCTTCTCCCAGAGTCTCTCATTTACTAAACAGGTTTGTGTAGTTCATAATGATGTATCAGAAAGCAATGATGTTGACTTGGAGTTTCCAAAATTTGGATTTCTTCATGCGGATGCCTCAGTGGCCAGGAAAGATGATCAACAATCAAAGGACTCATGTCATAGTGCTGAACCAATGAAAGGGGATTTCGCAGAAGATCATTCCTGGAAAGATCACCCTTTCAAATGGGCCAACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCCTTTGGGGCAATTCTCCTGTTCCAAGTAATAATAATGTTGAAAGCTGTGAAATTTCTGGACCTGAGTTGGGAGCTTCTGGTGGCAGTGAAATAGAAATTGAAAGTGGGATCCAGAATATTCAGATGGAGCCTCAGAAGATACTGGAGGATAAAGATCATAATGTCTTCATGTGCAGCTCTCCTGTCTCATTGGAGCCCTTTGGTTCAAGGGATTCGTCTGGAGCTAAGACCAATTTAATATCCAGAAGTCTATTTCACCCCCAACTTTTAAGGCTAGAATCCAGATCTGAGATGGATAGTTCTAGTCTTGCAGATGGAAGAGAGGTGGAGATATCTGAGCATAATCAAAGTGGTCAAGTAAAGCGTTTTACCAAGGTTATATCACAGAACAGAGACATGATGGATGGCTCCTGGTTAGACAAGATAATATGGGAGGAGCTTGATCAGCCTACGGTGAAACCAAAGCTTATCTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTAGATAGCGATGATGGTACACATCTTCGCCTTCATGCTGGGGCTATGATTTTAACTCGTTCTTTAAAATCAAGCAGCGGGGACTCTTCTGAGCTACCAGGACATGGAAGTCAATATGGATGGCGATATGTTGCTAATGACAAACACTATTCAAACCGTAAAACTTCTCAGCAACTGAAATCAAATTCCAAAAAACGCTCAGCTCATGGTGTCAAAGTTTTTCACTCACAACCTGCACTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCAAAAGCATTATGGTATCCCCATGACAATGAGGTGGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAAATTATTATAAAGAGTTTGGGTGGCAAGGGGAGTAAACTGCATGTCAATGCTGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTTAAGGTATCAGAAACAGTCAAAATATTTTATTTAGGGAGGGAGCTTGAAGATCACAAGTCACTTGCTGCACAAAATGTTCAACCAAACTCCTTGTTACATCTTGTTCGTACAAAGATACATTTGTGGCCAAAAGCACAAAGGGTTCCTGGTGAGAACAAGTCCTTGCGTCCTCCTGGGGCATTCAAGAAAAAGTCTGATCTGTCTGTAAAAGATGGACATGTTTTTCTGATGGAGTATTGTGAAGAAAGGCCTTTACTTTTGAGCAATGTTGGAATGGGTGCAAGACTTTGTACATACTATCAAAAATGCTCACCGGATGACCAATCTGGCTCCTTATTACGCAACACAGATAGTAGCTTGGGCACATTATTTCCCTGGATCCTGCTGATAAATCTCCTTTCCTTGGAGATTTAA 2526 0.4058 MGYDSDSPSQDGRDEDDEEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDVVEQDCDEKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKEFFSAEASVCLESKASVFDDENYDEESEKEQDFVNEDSKVDNIPLAGEQEESFVDASKEESSLEHELHVDSPQTEELDVDVQKLEEEGPEVQKRSTAMPLPVLYVEDGVAILRFSEIFGIHEPLRKGERREHRHSIPRDRYKSLDLTDDFVEEDEEEFLKGFSQSLSFTKQVCVVHNDVSESNDVDLEFPKFGFLHADASVARKDDQQSKDSCHSAEPMKGDFAEDHSWKDHPFKWANFYPLDQQDWEDEILWGNSPVPSNNNVESCEISGPELGASGGSEIEIESGIQNIQMEPQKILEDKDHNVFMCSSPVSLEPFGSRDSSGAKTNLISRSLFHPQLLRLESRSEMDSSSLADGREVEISEHNQSGQVKRFTKVISQNRDMMDGSWLDKIIWEELDQPTVKPKLIFDLQDDQMHFEVLDSDDGTHLRLHAGAMILTRSLKSSSGDSSELPGHGSQYGWRYVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIIKSLGGKGSKLHVNAEETLSSVKAKASKKLDFKVSETVKIFYLGRELEDHKSLAAQNVQPNSLLHLVRTKIHLWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDSSLGTLFPWILLINLLSLEI 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01541 841 ProSiteProfiles Ubiquitin domain profile. 669 739 IPR000626 GO:0005515
Pumo8g01541 841 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Pumo8g01541 841 MobiDBLite consensus disorder prediction 168 200 - -
Pumo8g01541 841 Pfam Ubiquitin family 671 741 IPR000626 GO:0005515
Pumo8g01541 841 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 13 819 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Pumo8g01541 841 CDD Ubl_TAFs_like 669 740 - -
Pumo8g01541 841 MobiDBLite consensus disorder prediction 88 113 - -
Pumo8g01541 841 Pfam Protein of unknown function (DUF3591) 589 815 IPR022591 -
Pumo8g01541 841 Coils Coil 834 841 - -
Pumo8g01541 841 MobiDBLite consensus disorder prediction 1 31 - -
Pumo8g01541 841 Pfam TATA box-binding protein binding 18 61 IPR009067 -
Pumo8g01541 841 SMART ubq_7 669 741 IPR000626 GO:0005515
Pumo8g01541 841 Gene3D - 12 68 IPR036741 -
Pumo8g01541 841 MobiDBLite consensus disorder prediction 66 113 - -
Pumo8g01541 841 SUPERFAMILY Ubiquitin-like 639 739 IPR029071 -
Pumo8g01541 841 MobiDBLite consensus disorder prediction 176 200 - -
Pumo8g01541 841 Gene3D - 651 741 - -
Pumo8g01541 841 FunFam Transcription initiation factor TFIID subunit 1 651 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01541 Pumo-Chr8 50195642 50209393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01541 669 739 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.028 6.36e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01541 K03125 - gmx:100780733 1519.6