Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01526 ATGGAGTCCAGTGAGCATGGGAGCGTGTCAGTTAGAGAGTTCCATGCGAATGGAAGCCGCATGGTTGCATCAGAAGTTGAGGCCAAGCTTGATCAAGGAAATATTCAAGAGGCAGAAAATGCATTGCGAGAAGGGTTGTCAATCAATTTTGAGGAAGCAAGAGCTCTTCTTGGAAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGCGATTGCAACCTTCCTCTTCTGAAAAAACACCAGTCAAGAAAGGTCGCACTCGCACTGAATCACCCTCCTCAGCCTCTCAGCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTGCAAAAACTGGGGAAATTTACTGAGGCTGCAAATGATTGTAAACGTATTCTCGATGCCGTTGAGAAGATATTTTATCTGGGTATTTCTGATATTCAAGTGGATAATAAATTGCAAGAAATAGTCAGCCATGCAGTTGAGCTCCTTCCAGAGCTTTGGAAACAAGCTGGTTGCTATGATGAGGCAATCTCTGCTTATAGACGAGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAGTCATTTGTTATTTTTTTGCTATACAGTGGGGTGGAGGCAAGTCCACCTAGTTTAGCAGTTCAGATTGATGGATCATATGTGCCTAAAAATAATCTTGAAGAGGCTATTCTTCTATTGATGATTCTTTTGAAAAAGTTTTGCATTGGTAAGATGAAATGGGATCCTTCAGTCATGGAACACCTGACTTTTGCACTTTCTATATGTAGTGGAACTTCTATTTTAGCAAAGCAACTTGAAGAATTGATGCCTGGAGTATACCATCGAATTGATTGTTGGAATTCTTTAGCTTTATGTTATAGTGGAGCTGGACAAAATGACAGTGCTTTGAATCTGCTAAGGAAGTCTTTGCACAAACATGAACGACCAAATGACCTTACATCATTGTTGTTAGCAGCCAGGATCTGCAGTGAGGATCCCCATCTTGCTGCTGAGGGAGTGAACCATGCACAGAGGGCAATCAGTAATGCTCATGGCCCAAATGAGCATTTAAAAGGTGTTGCTCTTCGGATGTTGGGACTTTGTCTGGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTTTGAGAGGTCTCACCTTCAGTCCAAAGCTCTGGAGTCATTGGTAGCAGCAATTAGATTGGAGCCAAACAATTCTGATCTGATTTTTGAATTGGCTGTCCAGTATGCAGAGCACCGAAATTTGCCTGCTGCTTTGCGCTCTGCGAGGCATTTCTTTAATGAAACAGGTGGTTCTGTATTGAAAGCTTGGAGATTGCTTGCTCTAATTTTGTCTGCACAACAAAGATTTTCAGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCAAGATGGGAGCAGGGGCCACTGCTTAGGCTGAAAGCAAAGTTGAAGATCTCCCAATCACGACCAATGGATGCTATTGAAACTTACCGGTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAATCCTCTGGGTCTCTCCAAATTAGGTCAAAGGTTGAGGATGATAAAGTAAATGAATTTGATATTTGGCATGGTCTGGCAAATTTATATGCTAGTCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGTCCAGGGAGTTGAAGAAATACTCTGCAGCATTGACTCACACCGAAGGTGTTTTGTTTGAAGGACGTGGGAAAAATGAAGAAGCTCTTTGTGCTACTATTAATGCTGTACTACTTGAACCAAACTATGTTCCATGCAAGATCTTGGTGGGTTCTTTGATTCAAAAAATGGGTTCAAAGTATTTGGCTGTTGCAAGAAGCTCACTGTCTGATGCACTCCGAATAGAACCCACAAACCGCAAGGCTTGGTATTACTTGGGATTGCTTCACAAGCATGATGGCCGAATAAGTGATGCTGCTGACTGCTTCCAAGCAGCTTCCATGCTTGAAGAATCTGATCCCATCGAAAGTTTCAGCTCTATACCTTGA 2085 0.4259 MESSEHGSVSVREFHANGSRMVASEVEAKLDQGNIQEAENALREGLSINFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSSSEKTPVKKGRTRTESPSSASQHAASLVLEAIYLKAKSLQKLGKFTEAANDCKRILDAVEKIFYLGISDIQVDNKLQEIVSHAVELLPELWKQAGCYDEAISAYRRALLSQWNLDNDCCARIQKSFVIFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILLKKFCIGKMKWDPSVMEHLTFALSICSGTSILAKQLEELMPGVYHRIDCWNSLALCYSGAGQNDSALNLLRKSLHKHERPNDLTSLLLAARICSEDPHLAAEGVNHAQRAISNAHGPNEHLKGVALRMLGLCLGKQAKVASSDFERSHLQSKALESLVAAIRLEPNNSDLIFELAVQYAEHRNLPAALRSARHFFNETGGSVLKAWRLLALILSAQQRFSEAEVVTDAALDQTARWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQKKSSGSLQIRSKVEDDKVNEFDIWHGLANLYASLSHWKDAEICLQKSRELKKYSAALTHTEGVLFEGRGKNEEALCATINAVLLEPNYVPCKILVGSLIQKMGSKYLAVARSSLSDALRIEPTNRKAWYYLGLLHKHDGRISDAADCFQAASMLEESDPIESFSSIP 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01526 694 SUPERFAMILY TPR-like 49 198 IPR011990 GO:0005515
Pumo8g01526 694 PANTHER PROTEIN NPG1 5 691 IPR043376 -
Pumo8g01526 694 MobiDBLite consensus disorder prediction 88 111 - -
Pumo8g01526 694 SUPERFAMILY TPR-like 118 443 IPR011990 GO:0005515
Pumo8g01526 694 ProSiteProfiles TPR repeat profile. 652 685 IPR019734 GO:0005515
Pumo8g01526 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Pumo8g01526 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Pumo8g01526 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Pumo8g01526 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Pumo8g01526 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Pumo8g01526 694 Pfam Tetratricopeptide repeat 28 75 - -
Pumo8g01526 694 SUPERFAMILY TPR-like 404 678 IPR011990 GO:0005515
Pumo8g01526 694 Gene3D Tetratricopeptide repeat domain 238 536 IPR011990 GO:0005515
Pumo8g01526 694 Gene3D Tetratricopeptide repeat domain 23 217 IPR011990 GO:0005515
Pumo8g01526 694 Gene3D Tetratricopeptide repeat domain 537 689 IPR011990 GO:0005515
Pumo8g01526 694 FunFam NPG1 539 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01526 Pumo-Chr8 49891065 49896922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01526 11 693 Calmodulin-binding Proteins AT2G43040 72.635 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01526 K21843 - gmx:100814609 1269.99