Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01521 ATGGCCATGTCTCTGACGCAGGGGGCGATAATGGAGATGTGCAGTGGCAGTTGCTCCGATAGCTTGCACCCGGTGCTGCAGATTATCGAGTTGAAGCTTGTGCAGTCGCAAAACAGCACCGTCGAGAGGTTCCGTTTGGTTCTCTCCGACGGTTCATATTACCAGCAAGGGATGCTCGCCACGCAGAAGAACGAGTTGGTTCATACCGGAAGGTTGCAGAAAGGCTCCGTTGTTAGACTCACTCAGTTCATCTGCAACGTTGTCCAGAACCGCAAGATCATTATTGTTGTTGACCTAGATGTTATACTGGACAAATATGAGCTGATTGGACAACCTGTCCTAGCACCAAATGATGCACCTGCAGAATCTGCCACTGGTCAATCAGGAGTCACCTTTGGGAATTCACAATCTTTTAATTTCAGTTCACATGCAGGTGGCATGAATGCTAGACCAAATGTATCTGGGCCATCTCCGCATTATCCAAAAGCGAATCCTCCTGCCAGTAATGCCCCTCCTACTTATGCTAAAGCAGAGACTCTGACTCCTGGGGCGATAATGGACATGTGCAGTGGCAATTGCTCTGAGGACTTGAAGCCGGTGTTGCAAGTCATAGAGTTGAAGCTGGTGCAGCCACAGCAGCACAACGCCACCGAGAGGTACCGTTTGGTGCTCTCCGACGGTTCCTTTTACCTGCAAGGGATGCTCGCGACGCAGAAGAACGAGTTGATCTATTCTGGAAGGTTGCAGAAAGGCTCTGTTGTTAGACTCACACAGTTCATCTGCAATGTTGTCCAGAACCGAAAGATTATTATCGTAGTTGACCTAGATGTTATACTTGACAAATGTGAGCTGATTGGAGAACCTGTCGCAGCTCCAAAAGGTGTACCTGCAGAATCTGGCATTGGTCAAGCTGGAGTCACCTTTGGGAATTCACAATCTTTAAATAGCGGTTCACATGCAGGTGGCATGACTGCTATACAAAATTTGGCTGGGCAATCTCTGGACTTGAAGCCGGTGCTGCAAGTTCTGGAGTTGAAGCTGGTGAATTCGCAGCAACACAGTGCCACCGAGAGTTTCCATTTGGTTCTCTCTGACGGTTCTCATTACCAGCAAGTGATGCTCGCGACACAGAAGAACCAATTGGTTCATTCTGGAAGGCTGCAAAAAGGCTCTGTTGTTAGACTCACTCAGTTCACCTACGACGTTGTCCAGAGCCGCAAGACTATTATCGTTGTTGATCTAGATGTTGTACTGGAGAAATGTGAACTGTTTGCAGAATCTGCCACTGGTCAATCTGGATTCACCTTTGGGAATTCACAATCTTTGAATAGCGGTTCACACTGCAGGTGGCGTCAGTGGGCTGGTGAATACTTTTAA 1377 0.4808 MAMSLTQGAIMEMCSGSCSDSLHPVLQIIELKLVQSQNSTVERFRLVLSDGSYYQQGMLATQKNELVHTGRLQKGSVVRLTQFICNVVQNRKIIIVVDLDVILDKYELIGQPVLAPNDAPAESATGQSGVTFGNSQSFNFSSHAGGMNARPNVSGPSPHYPKANPPASNAPPTYAKAETLTPGAIMDMCSGNCSEDLKPVLQVIELKLVQPQQHNATERYRLVLSDGSFYLQGMLATQKNELIYSGRLQKGSVVRLTQFICNVVQNRKIIIVVDLDVILDKCELIGEPVAAPKGVPAESGIGQAGVTFGNSQSLNSGSHAGGMTAIQNLAGQSLDLKPVLQVLELKLVNSQQHSATESFHLVLSDGSHYQQVMLATQKNQLVHSGRLQKGSVVRLTQFTYDVVQSRKTIIVVDLDVVLEKCELFAESATGQSGFTFGNSQSLNSGSHCRWRQWAGEYF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01521 458 FunFam Replication protein A subunit 4 115 - -
Pumo8g01521 458 FunFam Replication protein A subunit 179 292 - -
Pumo8g01521 458 CDD RPA1N 321 417 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pumo8g01521 458 Gene3D - 179 291 IPR012340 -
Pumo8g01521 458 Gene3D - 4 115 IPR012340 -
Pumo8g01521 458 Gene3D - 320 428 IPR012340 -
Pumo8g01521 458 CDD RPA1N 183 278 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pumo8g01521 458 MobiDBLite consensus disorder prediction 143 175 - -
Pumo8g01521 458 FunFam Replication protein A subunit 319 427 - -
Pumo8g01521 458 SUPERFAMILY Nucleic acid-binding proteins 179 286 IPR012340 -
Pumo8g01521 458 SUPERFAMILY Nucleic acid-binding proteins 331 423 IPR012340 -
Pumo8g01521 458 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Pumo8g01521 458 PANTHER RPA-RELATED PROTEIN RADX 5 164 IPR040893 GO:0003697
Pumo8g01521 458 CDD RPA1N 8 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pumo8g01521 458 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pumo8g01521 458 Pfam Replication factor-A protein 1, N-terminal domain 180 278 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pumo8g01521 458 Pfam Replication factor-A protein 1, N-terminal domain 322 418 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01521 Pumo-Chr8 49813697 49826981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01521 335 425 Core DNA Replication Machinery Family AT5G45400 41.489 5.44e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01521 K07466 - gmx:100812465 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01521 8 49813697 49826981 Pumo8g01521 8 49813697 49826981 ECH