Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01516 ATGCTGCTTGCTCTTCAGGTTGGCCTGGGTTTGAATCTAAAGGATCTTGATTTACATTTTGAGACATGGAGGGAGTTTGCTTCTGGCCAAATTGCTACCAGTATCGGAAGTGCTGCTTTGTGTTCCACAGGAACAATGGAGAGGTACAAGTTAATTAAGGAAGTTGGTGATGGGACGTTTGGGAGTGTCTGGAGAGCTATTAATAAGCAAACCGGTGAAGTTGTTGCTATCAAGAAAATGAAGAAGAAATATTACTCTTGGGAGGAGTGTGTAAATCTGAGAGAAGTCAAGTCATTACGAAAAATGAACCACCTAAATATTGTGAAGCTGAAGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATGGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAAGGTGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTCTTGCTTACATGCACCAGCGTGGATACTTCCATCGCGACCTGAAGCCTGAAAACTTGCTAGTTACCAAGGATATTATCAAAATCGCTGATTTTGGCCTAGCCCGAGAGATCAGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATGGTATCGTGCTCCTGAAGTGCTGCTTCAGTCTTATCTGTATACCTCTAAAGTTGACATGTGGGCAATGGGTGCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAGTGAAGCGGATGAGATCTACAAAATATGCAGTGTGATAGGCAATCCAACCTTTGAATCATGGGCGGATGGACTCAAACTTGCAAGGAATATTAACTACCAGTTTCCACAGCTTGCCGGTGTGCATCTTTCTGCATTGATTCCGTCTGCGAGTGATGATGCAATCAGCCTTATTACATCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACAGCTTCAGAGGCACTTCAACATCCTTTCTTCCAGAGTTGCTTTTACATTCCTCCATCCCTTCGCACCAGAGCAGTAGCGAGAACTCCTCCACCCGCTGGAACCAGAGGAGCACTGGATCAGCAAGGGGTCAAGAGATATTCCGGTGCTTTACCTACTTCAAAGCTCTCCAATAATATTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAGGTGACCCAATTGGTTTTACATATTTACTGAATAGTTCCATGAATTATGCGTTTTTCATCGAGTTTTTGATGTGGAGCAACAGGACCACAAAAAGCATACGGGTTGCTGAAAGAAACGTTAATATTATGAAAAGAACATAG 1305 0.4276 MLLALQVGLGLNLKDLDLHFETWREFASGQIATSIGSAALCSTGTMERYKLIKEVGDGTFGSVWRAINKQTGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHLNIVKLKEVIRESDILYFVFEYMECNLYQLMKDREKLFSEGEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAREISSQPPYTEYVSTRWYRAPEVLLQSYLYTSKVDMWAMGAIMAELFSLRPLFPGASEADEIYKICSVIGNPTFESWADGLKLARNINYQFPQLAGVHLSALIPSASDDAISLITSLCSWDPCKRPTASEALQHPFFQSCFYIPPSLRTRAVARTPPPAGTRGALDQQGVKRYSGALPTSKLSNNISSMKLHPPLASGDPIGFTYLLNSSMNYAFFIEFLMWSNRTTKSIRVAERNVNIMKRT 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01516 434 SMART serkin_6 49 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01516 434 ProSitePatterns Protein kinases ATP-binding region signature. 55 79 IPR017441 GO:0005524
Pumo8g01516 434 SUPERFAMILY Protein kinase-like (PK-like) 44 332 IPR011009 -
Pumo8g01516 434 FunFam cyclin-dependent kinase F-4-like 46 128 - -
Pumo8g01516 434 Gene3D Transferase(Phosphotransferase) domain 1 128 333 - -
Pumo8g01516 434 ProSiteProfiles Protein kinase domain profile. 49 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01516 434 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 47 350 - -
Pumo8g01516 434 FunFam serine/threonine-protein kinase MAK isoform X1 129 338 - -
Pumo8g01516 434 Pfam Protein kinase domain 49 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01516 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Pumo8g01516 434 Gene3D Phosphorylase Kinase; domain 1 39 127 - -
Pumo8g01516 434 CDD STKc_MAK_like 49 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01516 Pumo-Chr8 49756309 49761073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01516 46 335 Core Cell Cycle Gene Families AT3G48750 36.824 4.95e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Pumo8g01516 Pkinase 1.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01516 K08829 - gmx:100810150 691.804