Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01500 ATGGAGGGTGGAGGAAGAGAAGGTTATAATGGAGTCGTGATGACGATGACACGCGACCCGAAGCCGAGGCTAAGGTGGACGGCAGATCTTCATGACCGGTTTGTGGATGCAGTCACAAAGCTTGGTGGCCCCGATAAGGCGACTCCCAAGTCTGTTCTGAGGTTAATGGGCTTGAAAGGGCTGACACTATATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAGCAGGCTCGAAAACAAAATGAGGAAGTGCACAAAGAGAATAGTAGATGTTCGTTTGTAAATTTTAGTAATCGTTCTTCAGCACCTAACACCAGTTACAGAGGTGATAATGAAGGGGGAGAAATCCCAATAGCAGAAGCACTGAGGCGTCAGATTGAAGTTCAAAAGAGATTGGAGGAGCAGCTCGAGGTACAGAAGAAATTGCAGATGAGAATAGAGGCACAAGGGAAGTATTTGCAAGCGGTGTTAGAGAAAGCCCAGAGGAGCCTTTCCTTGGATGGACCAGGCAGTCTTGAAGCATCAAGAGCTCAGTTGACTGAATTCAACTCTGCTTTGTCAAATTTCATGGAAAATATGAATAAAGATAGCAAACAAAACATAATAGAAGTGAATGATTTTTATAGTAAGAGCCATGGCTCAGCTTTCCATTATCAGGAAGTAGGGAGAGAACAAAAGAGGGACCAAAAGCCCAAGGTTGAAGGGGGTTCAATACAGTTTGACTTAAACATCAAAGGTAGCAATGACCTTGTATCCGCAGTTGGAGCTGAAATGGATGCCAATATGATTTCATATAGGGTATAA 810 0.4358 MEGGGREGYNGVVMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQARKQNEEVHKENSRCSFVNFSNRSSAPNTSYRGDNEGGEIPIAEALRRQIEVQKRLEEQLEVQKKLQMRIEAQGKYLQAVLEKAQRSLSLDGPGSLEASRAQLTEFNSALSNFMENMNKDSKQNIIEVNDFYSKSHGSAFHYQEVGREQKRDQKPKVEGGSIQFDLNIKGSNDLVSAVGAEMDANMISYRV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01500 269 Pfam MYB-CC type transfactor, LHEQLE motif 119 164 IPR025756 -
Pumo8g01500 269 Coils Coil 121 151 - -
Pumo8g01500 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 78 IPR017930 -
Pumo8g01500 269 NCBIfam myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
Pumo8g01500 269 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Pumo8g01500 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 212 IPR044848 GO:0003700
Pumo8g01500 269 SUPERFAMILY Homeodomain-like 21 78 IPR009057 -
Pumo8g01500 269 Gene3D - 20 78 - -
Pumo8g01500 269 FunFam Myb family transcription factor 20 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01500 Pumo-Chr8 49621037 49624254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01500 12 190 G2-like Transcription Factor Family AT3G24120 54.011 1.70e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo8g01500 Myb_DNA-binding 2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01500 - - gmx:100810146 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01500 8 49621037 49624254 Pumo8g01500 8 49621037 49624254 ECH