Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01496 ATGGCTGCAAATGTAAACTGCGACATGCCCCTCACTCACCACCCTCATTGGTTCTCTCCAAAATCCGGTATTTACCACAGCAAACACGCCCCCGTGGACCTTCCCAACGACCCTTTTCTCGACCTTGTTTCCTTCGTTTTTTCCCACCGCCATAATGGGGTTTCGGCCCTCGTTGATTCCTCATCTGGGTGTTCCATTTCCTACTCAAAGTTGCTACCTTTGGTCAAATCCGTTGCCTCTGGTCTTCACAGAATGGGTGTTTCACAAGGTGACGTGGTTCTGCTTCTTCTCCCAAATTCCATTTACTACCCCATTGTGTTCTTGGCTGTTCTCTATCTCGGTGCTGTTGTTACACCCTTGAATCCTCTTAGTAGTGTCTATGAAATACGCAGGCAGGTTAATGAGTGTGGTGTGAGTCTGGCTTTTACTGTGCCTGAAAATGAGAAGAAACTTGAGCCATTGGGAATTTCTGTTATTGCTGTGCCAGAAAATGAGGAGGGTTTGAGGCATGGTTGTTTTTCATGCTTTTGTGACTTGATTTCTGGTGACTTTGATTTGCCTAAAAGGCCTATTATTAAGCAGGATGACACTGCTGGGATATTATATTCTTCAGGGACTACTGGTGTGAGCAAAGGGGTTGTTCTGTCCCATAAAAATCTTGTTGCTATGGTTGAGCTTTTTGTGAGGTTTGAAGCTTCTCAATATGAACACTCTTGCTTGAGGAATGTGTATCTGGCTGTTTTGCCAATGTTTCATGTGTATGGTTTATCGCTATTTGCTCTGGGACTGCTGTCTTTGGGTTCTACTGTCGTTGTGATGAGGAAATTTGACATAGATGAGGTCATCAGGGTGATTGATGAATACAAAGTTACACACTTTCCTGTTGTTCCACCAATGTTGACAGCATTGATGACAAGGGCAAAGAGTATTAATGGCTGTAAGTTGCAGAGTTTGATACAGGTCTCCAGCGGTGCAGCGCCTTTGAGCATGGGAGTTATTAATGAGTTCATCCGAGCTTTCCCTAATGTTGATTTTATACAGGGTTATGGAATGACTGAGTCAACTGCAGTAGGAACACGTGGCTTCAATACTGAAAAGTTTCGCAATTATTCTTCAATAGGGTTATTGGCTCCAAACATGGAGGCAAAAGTGGTAGACTGGAATACTGGTGCATTTTTGCCCCCAGGCAGCAGTGGTGAGCTTTGGTTGAGAGGGCCTTCAATTATGACTGGATACTTGAATAACGAGGAAGCTACAATGTCAACAATTGATAAAGATGGTTGGCTACATACTGGAGATGTTGTTTGTTTTGATCACGATGGGTATTTACACATATCTGACCGCTTGAAAGATATCATCAAATACAAGGGCTTTCAGATTGCTCCTGCCGATTTAGAAGCTGTGTTAATTTTGCATCCTGAAATAGTTGATGTTGCTGTTACAGGTGCTATGGATGAAGAAACCGGGGAGATGCCAGTGGCATTTGTTGTCAGGAAGGTTGGTAGTGTGCTGTCTCCAAAGCATATTATGGATTATGTTGCTGAGCAGGTTGCTCCATATAAGAAGGTTAGGAAAGTGTTCTTCACTGACAAGATACCAAGGTCTGCTACTGGGAAGATCCTACGAAAGCAACTGAGGAATTGCTTGACTTCTAAACTATAA 1662 0.4332 MAANVNCDMPLTHHPHWFSPKSGIYHSKHAPVDLPNDPFLDLVSFVFSHRHNGVSALVDSSSGCSISYSKLLPLVKSVASGLHRMGVSQGDVVLLLLPNSIYYPIVFLAVLYLGAVVTPLNPLSSVYEIRRQVNECGVSLAFTVPENEKKLEPLGISVIAVPENEEGLRHGCFSCFCDLISGDFDLPKRPIIKQDDTAGILYSSGTTGVSKGVVLSHKNLVAMVELFVRFEASQYEHSCLRNVYLAVLPMFHVYGLSLFALGLLSLGSTVVVMRKFDIDEVIRVIDEYKVTHFPVVPPMLTALMTRAKSINGCKLQSLIQVSSGAAPLSMGVINEFIRAFPNVDFIQGYGMTESTAVGTRGFNTEKFRNYSSIGLLAPNMEAKVVDWNTGAFLPPGSSGELWLRGPSIMTGYLNNEEATMSTIDKDGWLHTGDVVCFDHDGYLHISDRLKDIIKYKGFQIAPADLEAVLILHPEIVDVAVTGAMDEETGEMPVAFVVRKVGSVLSPKHIMDYVAEQVAPYKKVRKVFFTDKIPRSATGKILRKQLRNCLTSKL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01496 553 Gene3D - 23 450 IPR042099 -
Pumo8g01496 553 FunFam 4-coumarate--CoA ligase 2 451 552 - -
Pumo8g01496 553 CDD 4CL 34 545 - -
Pumo8g01496 553 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Pumo8g01496 553 Pfam AMP-binding enzyme C-terminal domain 465 539 IPR025110 -
Pumo8g01496 553 SUPERFAMILY Acetyl-CoA synthetase-like 51 549 - -
Pumo8g01496 553 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 547 - -
Pumo8g01496 553 Gene3D - 451 551 IPR045851 -
Pumo8g01496 553 Pfam AMP-binding enzyme 50 455 IPR000873 -
Pumo8g01496 553 FunFam Long-chain-fatty-acid--CoA ligase FadD 26 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01496 Pumo-Chr8 49567080 49571094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01496 15 553 Monolignol Biosynthesis Gene Families AT4G19010 59.779 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01496 K01904 - gmx:100804808 1035.79